Your message dated Mon, 20 Dec 2010 10:32:24 +0000
with message-id <[email protected]>
and subject line Bug#607535: fixed in velvet 1.0.15~nozlibcopy-2
has caused the Debian Bug report #607535,
regarding [aeskulap] FTBFS with linker flag --as-needed
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
607535: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=607535
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: aeskulap
Version: 0.2.2b1-6
Severity: wishlist
Tags: patch
Hi,
aeskulap fails to build from source, if --as-needed is used as linker flag
[1,2]. The reason is that --as-needed enforces a strict linking order (symbol
users in front of symbol definitions).
Attached is a patch that fixes the problem. You'll also need to run autoreconf
after applying the patch.
Cheers,
Stefan.
[1]:
<http://people.ubuntuwire.org/~lucas/ubuntu-nbs/32/aeskulap_0.2.2b1-6_lubuntu32.buildlog>
[2]:
<http://people.ubuntuwire.org/~lucas/ubuntu-nbs/64/aeskulap_0.2.2b1-6_lubuntu64.buildlog>
-- System Information:
Debian Release: squeeze/sid
APT prefers natty-updates
APT policy: (500, 'natty-updates'), (500, 'natty-security'), (500, 'natty')
Architecture: amd64 (x86_64)
Kernel: Linux 2.6.37-10-generic (SMP w/4 CPU cores)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Versions of packages aeskulap depends on:
pn dcmtk <none> (no description available)
ii gconf2 2.32.1-1ubuntu2 GNOME configuration database syste
ii libatk1.0-0 1.32.0-2 The ATK accessibility toolkit
ii libc6 2.12.1-0ubuntu9 Embedded GNU C Library: Shared lib
ii libcairo2 1.10.0-1ubuntu5 The Cairo 2D vector graphics libra
pn libcairomm-1.0-1 <none> (no description available)
pn libdcmtk1 <none> (no description available)
ii libfontconfig1 2.8.0-2.1ubuntu1 generic font configuration library
ii libfreetype6 2.4.2-2.1 FreeType 2 font engine, shared lib
ii libgcc1 1:4.5.1-12ubuntu1 GCC support library
ii libgconf2-4 2.32.1-1ubuntu2 GNOME configuration database syste
pn libgconfmm-2.6-1 <none> (no description available)
ii libglade2-0 1:2.6.4-1build1 library to load .glade files at ru
pn libglademm-2.4-1 <none> (no description available)
ii libglib2.0-0 2.27.4-0ubuntu1 The GLib library of C routines
ii libglibmm-2.4-1c 2.27.4-0ubuntu1 C++ wrapper for the GLib toolkit (
ii libgtk2.0-0 2.23.2-0ubuntu4 The GTK+ graphical user interface
pn libgtkmm-2.4-1c2 <none> (no description available)
ii libjpeg62 6b1-1 The Independent JPEG Group's JPEG
ii libpango1.0-0 1.28.3-3 Layout and rendering of internatio
pn libpangomm-1.4-1 <none> (no description available)
ii libpng12-0 1.2.44-1 PNG library - runtime
ii libsigc++-2.0-0c 2.2.4.2-1 type-safe Signal Framework for C++
ii libstdc++6 4.5.1-12ubuntu1 The GNU Standard C++ Library v3
ii libtiff4 3.9.4-5 Tag Image File Format (TIFF) libra
ii libwrap0 7.6.q-19 Wietse Venema's TCP wrappers libra
ii libx11-6 2:1.3.3-3ubuntu2 X11 client-side library
ii libxml2 2.7.8.dfsg-1 GNOME XML library
ii zlib1g 1:1.2.3.4.dfsg-3ubuntu1 compression library - runtime
aeskulap recommends no packages.
aeskulap suggests no packages.
Index: aeskulap-0.2.2b1/src/Makefile.am
===================================================================
--- aeskulap-0.2.2b1.orig/src/Makefile.am 2010-12-19 16:08:25.332866917 +0100
+++ aeskulap-0.2.2b1/src/Makefile.am 2010-12-19 16:08:45.862866917 +0100
@@ -37,12 +37,12 @@
aeskulap_LDADD = \
$(ICONOBJ) \
- $(GTKMM_LIBS) \
- $(GLADEMM_LIBS) \
- $(GTHREAD_LIBS) \
../widgets/libgtkdicom.la \
../imagepool/libimagepool.la \
../configuration/libconfiguration.la \
+ $(GTKMM_LIBS) \
+ $(GLADEMM_LIBS) \
+ $(GTHREAD_LIBS) \
$(GCONFMM_LIBS) \
$(DCMTK_LIBS)
--- End Message ---
--- Begin Message ---
Source: velvet
Source-Version: 1.0.15~nozlibcopy-2
We believe that the bug you reported is fixed in the latest version of
velvet, which is due to be installed in the Debian FTP archive:
velvet-example_1.0.15~nozlibcopy-2_all.deb
to main/v/velvet/velvet-example_1.0.15~nozlibcopy-2_all.deb
velvet_1.0.15~nozlibcopy-2.debian.tar.gz
to main/v/velvet/velvet_1.0.15~nozlibcopy-2.debian.tar.gz
velvet_1.0.15~nozlibcopy-2.dsc
to main/v/velvet/velvet_1.0.15~nozlibcopy-2.dsc
velvet_1.0.15~nozlibcopy-2_amd64.deb
to main/v/velvet/velvet_1.0.15~nozlibcopy-2_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated velvet package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Mon, 20 Dec 2010 08:43:16 +0100
Source: velvet
Binary: velvet velvet-example
Architecture: source all amd64
Version: 1.0.15~nozlibcopy-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
velvet - Nucleic acid sequence assembler for very short reads
velvet-example - Example data for the Velvet sequence assembler
Closes: 607535
Changes:
velvet (1.0.15~nozlibcopy-2) unstable; urgency=low
.
* Fix FTBFS with ld --as-needed (thanks for the patch to
Matthias Klose)
Closes: #607535
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Files:
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velvet_1.0.15~nozlibcopy-2.dsc
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velvet-example_1.0.15~nozlibcopy-2_all.deb
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--- End Message ---
