Your message dated Sat, 09 Jun 2012 18:34:31 +0200
with message-id <[email protected]>
and subject line
has caused the Debian Bug report #676657,
regarding [libatlas3gf-base] update-alternatives doesn't provide libblas.so.3gf
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
676657: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=676657
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: libatlas3gf-base
Version: 3.8.4-5
Severity: grave
Tags: patch
Here is full log from today morning upgrade:
-------------
$ sudo aptitude safe-upgrade -t sid
Resolving dependencies...
The following packages will be upgraded:
autopoint bzip2 dctrl-tools dnsmasq-base firebird2.5-common
firebird2.5-common-doc fonts-opensymbol gettext gettext-base
initramfs-tools libasprintf0c2
libatlas3-base libatlas3gf-base libbrlapi0.5 libbz2-1.0 libbz2-dev
libfbclient2 libgettextpo0 libgnutls-dev libgnutls-openssl27
libgnutls26
libgnutlsxx27 libreoffice libreoffice-base libreoffice-base-core
libreoffice-calc libreoffice-common libreoffice-core libreoffice-draw
libreoffice-emailmerge libreoffice-filter-binfilter
libreoffice-filter-mobiledev libreoffice-help-en-us
libreoffice-impress libreoffice-java-common
libreoffice-math libreoffice-report-builder-bin
libreoffice-style-galaxy libreoffice-writer libtasn1-3 libtasn1-3-dev
libx86-1 python-tz python-uno
shared-mime-info ttf-opensymbol uno-libs3 ure xfonts-mathml
49 packages upgraded, 0 newly installed, 0 to remove and 104 not upgraded.
Need to get 129 MB of archives. After unpacking 1,779 kB will be used.
Do you want to continue? [Y/n/?] e
Retrieving bug reports... Done
Parsing Found/Fixed information... Done
Extracting templates from packages: 100%
(Reading database ... 415903 files and directories currently installed.)
Preparing to replace libbz2-dev:amd64 1.0.6-2 (using
.../libbz2-dev_1.0.6-3_amd64.deb) ...
Unpacking replacement libbz2-dev:amd64 ...
Preparing to replace bzip2 1.0.6-2 (using .../bzip2_1.0.6-3_amd64.deb) ...
Unpacking replacement bzip2 ...
Preparing to replace libbz2-1.0:amd64 1.0.6-2 (using
.../libbz2-1.0_1.0.6-3_amd64.deb) ...
Unpacking replacement libbz2-1.0:amd64 ...
Processing triggers for man-db ...
Setting up libbz2-1.0:amd64 (1.0.6-3) ...
(Reading database ... 415903 files and directories currently installed.)
Preparing to replace gettext 0.18.1.1-8 (using
.../gettext_0.18.1.1-9_amd64.deb) ...
Unpacking replacement gettext ...
Preparing to replace libgettextpo0:amd64 0.18.1.1-8 (using
.../libgettextpo0_0.18.1.1-9_amd64.deb) ...
Unpacking replacement libgettextpo0:amd64 ...
Preparing to replace libasprintf0c2:amd64 0.18.1.1-8 (using
.../libasprintf0c2_0.18.1.1-9_amd64.deb) ...
Unpacking replacement libasprintf0c2:amd64 ...
Preparing to replace gettext-base 0.18.1.1-8 (using
.../gettext-base_0.18.1.1-9_amd64.deb) ...
Unpacking replacement gettext-base ...
Preparing to replace libgnutls-dev 2.12.19-1 (using
.../libgnutls-dev_2.12.19-2_amd64.deb) ...
Unpacking replacement libgnutls-dev ...
Preparing to replace libgnutlsxx27:amd64 2.12.19-1 (using
.../libgnutlsxx27_2.12.19-2_amd64.deb) ...
Unpacking replacement libgnutlsxx27:amd64 ...
Preparing to replace libtasn1-3-dev 2.12-1 (using
.../libtasn1-3-dev_2.13-2_amd64.deb) ...
Unpacking replacement libtasn1-3-dev ...
Preparing to replace libtasn1-3:amd64 2.12-1 (using
.../libtasn1-3_2.13-2_amd64.deb) ...
Unpacking replacement libtasn1-3:amd64 ...
Preparing to replace libgnutls-openssl27:amd64 2.12.19-1 (using
.../libgnutls-openssl27_2.12.19-2_amd64.deb) ...
Unpacking replacement libgnutls-openssl27:amd64 ...
Preparing to replace libgnutls26:amd64 2.12.19-1 (using
.../libgnutls26_2.12.19-2_amd64.deb) ...
Unpacking replacement libgnutls26:amd64 ...
Preparing to replace libfbclient2:amd64 2.5.2~svn+54545.ds4-1 (using
.../libfbclient2_2.5.2~svn+54604.ds4-1_amd64.deb) ...
Unpacking replacement libfbclient2:amd64 ...
Preparing to replace firebird2.5-common 2.5.2~svn+54545.ds4-1 (using
.../firebird2.5-common_2.5.2~svn+54604.ds4-1_all.deb) ...
Unpacking replacement firebird2.5-common ...
Preparing to replace firebird2.5-common-doc 2.5.2~svn+54545.ds4-1
(using .../firebird2.5-common-doc_2.5.2~svn+54604.ds4-1_all.deb) ...
Unpacking replacement firebird2.5-common-doc ...
Preparing to replace ure 3.5.4-2 (using .../archives/ure_3.5.4-3_amd64.deb) ...
Unpacking replacement ure ...
Preparing to replace uno-libs3 3.5.4-2 (using
.../uno-libs3_3.5.4-3_amd64.deb) ...
Unpacking replacement uno-libs3 ...
Preparing to replace libreoffice-calc 1:3.5.4-2 (using
.../libreoffice-calc_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-calc ...
Preparing to replace libreoffice-writer 1:3.5.4-2 (using
.../libreoffice-writer_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-writer ...
Preparing to replace libreoffice-base 1:3.5.4-2 (using
.../libreoffice-base_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-base ...
Preparing to replace libreoffice-base-core 1:3.5.4-2 (using
.../libreoffice-base-core_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-base-core ...
Preparing to replace libreoffice-java-common 1:3.5.4-2 (using
.../libreoffice-java-common_1%3a3.5.4-3_all.deb) ...
Unpacking replacement libreoffice-java-common ...
Preparing to replace libreoffice-impress 1:3.5.4-2 (using
.../libreoffice-impress_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-impress ...
Preparing to replace libreoffice-draw 1:3.5.4-2 (using
.../libreoffice-draw_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-draw ...
Preparing to replace python-uno 1:3.5.4-2 (using
.../python-uno_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement python-uno ...
Preparing to replace libreoffice-common 1:3.5.4-2 (using
.../libreoffice-common_1%3a3.5.4-3_all.deb) ...
Unpacking replacement libreoffice-common ...
Preparing to replace libreoffice 1:3.5.4-2 (using
.../libreoffice_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice ...
Preparing to replace libreoffice-math 1:3.5.4-2 (using
.../libreoffice-math_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-math ...
Processing triggers for install-info ...
install-info: warning: no info dir entry in
`/usr/share/info/adacontrol_ug.info.gz'
Processing triggers for man-db ...
Processing triggers for doc-base ...
Processing 1 changed doc-base file...
Registering documents with dhelp...
Processing triggers for desktop-file-utils ...
Processing triggers for menu ...
Processing triggers for mime-support ...
Processing triggers for hicolor-icon-theme ...
Processing triggers for gnome-icon-theme ...
Processing triggers for shared-mime-info ...
Setting up uno-libs3 (3.5.4-3) ...
Setting up ure (3.5.4-3) ...
(Reading database ... 415903 files and directories currently installed.)
Preparing to replace libreoffice-core 1:3.5.4-2 (using
.../libreoffice-core_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-core ...
Preparing to replace libreoffice-filter-binfilter 1:3.5.4-2 (using
.../libreoffice-filter-binfilter_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-filter-binfilter ...
Preparing to replace fonts-opensymbol 2:102.2+LibO3.5.4-2 (using
.../fonts-opensymbol_2%3a102.2+LibO3.5.4-3_all.deb) ...
Unpacking replacement fonts-opensymbol ...
Preparing to replace ttf-opensymbol 2:102.2+LibO3.5.4-2 (using
.../ttf-opensymbol_2%3a102.2+LibO3.5.4-3_all.deb) ...
Unpacking replacement ttf-opensymbol ...
Preparing to replace libreoffice-report-builder-bin 1:3.5.4-2 (using
.../libreoffice-report-builder-bin_1%3a3.5.4-3_amd64.deb) ...
Unpacking replacement libreoffice-report-builder-bin ...
Preparing to replace libreoffice-filter-mobiledev 1:3.5.4-2 (using
.../libreoffice-filter-mobiledev_1%3a3.5.4-3_all.deb) ...
Unpacking replacement libreoffice-filter-mobiledev ...
Preparing to replace libreoffice-style-galaxy 1:3.5.4-2 (using
.../libreoffice-style-galaxy_1%3a3.5.4-3_all.deb) ...
Unpacking replacement libreoffice-style-galaxy ...
Preparing to replace libx86-1 1.1+ds1-7 (using
.../libx86-1_1.1+ds1-9_amd64.deb) ...
Unpacking replacement libx86-1:amd64 ...
Preparing to replace libbrlapi0.5:amd64 4.3-3 (using
.../libbrlapi0.5_4.4-1_amd64.deb) ...
Unpacking replacement libbrlapi0.5:amd64 ...
Preparing to replace autopoint 0.18.1.1-8 (using
.../autopoint_0.18.1.1-9_all.deb) ...
Unpacking replacement autopoint ...
Preparing to replace dctrl-tools 2.22.1 (using
.../dctrl-tools_2.22.2_amd64.deb) ...
Unpacking replacement dctrl-tools ...
Preparing to replace dnsmasq-base 2.62-1 (using
.../dnsmasq-base_2.62-2_amd64.deb) ...
Unpacking replacement dnsmasq-base ...
Preparing to replace initramfs-tools 0.105 (using
.../initramfs-tools_0.106_all.deb) ...
Unpacking replacement initramfs-tools ...
Preparing to replace libatlas3-base 3.8.4-4 (using
.../libatlas3-base_3.8.4-5_amd64.deb) ...
update-alternatives: error: no alternatives for libblas.so.3gf.
dpkg: warning: subprocess old pre-removal script returned error exit status 2
dpkg - trying script from the new package instead ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide
/usr/lib/libblas.so.3 (libblas.so.3) in auto mode.
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide
/usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode.
dpkg: ... it looks like that went OK.
Unpacking replacement libatlas3-base ...
Preparing to replace libatlas3gf-base 3.8.4-4 (using
.../libatlas3gf-base_3.8.4-5_amd64.deb) ...
update-alternatives: error: no alternatives for libblas.so.3gf.
dpkg: warning: subprocess old pre-removal script returned error exit status 2
dpkg - trying script from the new package instead ...
dpkg: ... it looks like that went OK.
Unpacking replacement libatlas3gf-base ...
Preparing to replace libreoffice-emailmerge 1:3.5.4-2 (using
.../libreoffice-emailmerge_1%3a3.5.4-3_all.deb) ...
Unpacking replacement libreoffice-emailmerge ...
Preparing to replace libreoffice-help-en-us 1:3.5.4-2 (using
.../libreoffice-help-en-us_1%3a3.5.4-3_all.deb) ...
Unpacking replacement libreoffice-help-en-us ...
Preparing to replace python-tz 2011h-1 (using .../python-tz_2012c-1_all.deb) ...
Unpacking replacement python-tz ...
Preparing to replace shared-mime-info 0.90-1.1 (using
.../shared-mime-info_1.0-1_amd64.deb) ...
Unpacking replacement shared-mime-info ...
Preparing to replace xfonts-mathml 5 (using .../xfonts-mathml_6_all.deb) ...
Unpacking replacement xfonts-mathml ...
Processing triggers for desktop-file-utils ...
Processing triggers for mime-support ...
Processing triggers for fontconfig ...
Processing triggers for man-db ...
Processing triggers for doc-base ...
Processing 2 changed doc-base files...
Registering documents with dhelp...
Setting up libbz2-dev:amd64 (1.0.6-3) ...
Setting up bzip2 (1.0.6-3) ...
Setting up libgettextpo0:amd64 (0.18.1.1-9) ...
Setting up libasprintf0c2:amd64 (0.18.1.1-9) ...
Setting up gettext-base (0.18.1.1-9) ...
Setting up gettext (0.18.1.1-9) ...
Setting up libtasn1-3:amd64 (2.13-2) ...
Setting up libgnutls26:amd64 (2.12.19-2) ...
Setting up libgnutlsxx27:amd64 (2.12.19-2) ...
Setting up libgnutls-openssl27:amd64 (2.12.19-2) ...
Setting up libtasn1-3-dev (2.13-2) ...
Setting up libgnutls-dev (2.12.19-2) ...
Setting up firebird2.5-common-doc (2.5.2~svn+54604.ds4-1) ...
Setting up firebird2.5-common (2.5.2~svn+54604.ds4-1) ...
Setting up libfbclient2:amd64 (2.5.2~svn+54604.ds4-1) ...
Setting up fonts-opensymbol (2:102.2+LibO3.5.4-3) ...
Setting up ttf-opensymbol (2:102.2+LibO3.5.4-3) ...
Setting up libx86-1:amd64 (1.1+ds1-9) ...
Setting up libbrlapi0.5:amd64 (4.4-1) ...
Setting up autopoint (0.18.1.1-9) ...
Setting up dctrl-tools (2.22.2) ...
Setting up dnsmasq-base (2.62-2) ...
Setting up initramfs-tools (0.106) ...
update-initramfs: deferring update (trigger activated)
Setting up libatlas3-base (3.8.4-5) ...
update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to
provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode.
update-alternatives: warning: skip creation of /usr/lib/libblas.so.3gf
because associated file /usr/lib/atlas-base/libblas.so.3 (of link
group libblas.so.3) doesn't exist.
update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to
provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode.
Setting up libatlas3gf-base (3.8.4-5) ...
Setting up python-tz (2012c-1) ...
Setting up shared-mime-info (1.0-1) ...
Setting up xfonts-mathml (6) ...
Setting up libreoffice-style-galaxy (1:3.5.4-3) ...
Setting up libreoffice-common (1:3.5.4-3) ...
Setting up libreoffice-core (1:3.5.4-3) ...
Setting up libreoffice-base-core (1:3.5.4-3) ...
Setting up libreoffice-calc (1:3.5.4-3) ...
Setting up libreoffice-writer (1:3.5.4-3) ...
Setting up libreoffice-java-common (1:3.5.4-3) ...
Setting up libreoffice-base (1:3.5.4-3) ...
Setting up libreoffice-draw (1:3.5.4-3) ...
Setting up libreoffice-impress (1:3.5.4-3) ...
Setting up python-uno (1:3.5.4-3) ...
Setting up libreoffice-math (1:3.5.4-3) ...
Setting up libreoffice-report-builder-bin (1:3.5.4-3) ...
Setting up libreoffice-filter-mobiledev (1:3.5.4-3) ...
Setting up libreoffice (1:3.5.4-3) ...
Setting up libreoffice-filter-binfilter (1:3.5.4-3) ...
Setting up libreoffice-emailmerge (1:3.5.4-3) ...
Setting up libreoffice-help-en-us (1:3.5.4-3) ...
Processing triggers for initramfs-tools ...
update-initramfs: Generating /boot/initrd.img-3.2.0-2-amd64
Processing triggers for menu ...
Press return to continue.
-------------------
Note these lines:
-----
Preparing to replace libatlas3gf-base 3.8.4-4 (using
.../libatlas3gf-base_3.8.4-5_amd64.deb) ...
update-alternatives: error: no alternatives for libblas.so.3gf.
dpkg: warning: subprocess old pre-removal script returned error exit status 2
dpkg - trying script from the new package instead ...
dpkg: ... it looks like that went OK.
-----
This causes things like this:
darkestkhan@khaganate ~ $ mnemosyne
Uncaught exception!
Traceback (innermost last):
File "/usr/bin/mnemosyne", line 146, in <module>
debug_file=options.debug_file)
File "/usr/lib/python2.7/dist-packages/mnemosyne/libmnemosyne/__init__.py",
line 146, in initialise
self.register_components()
File "/usr/lib/python2.7/dist-packages/mnemosyne/libmnemosyne/__init__.py",
line 199, in register_components
exec("from %s import %s" % (module_name, class_name))
File "<string>", line 1, in <module>
File
"/usr/lib/python2.7/dist-packages/mnemosyne/pyqt_ui/statistics_wdgts_plotting.py",
line 7, in <module>
from matplotlib.figure import Figure
File "/usr/lib/pymodules/python2.7/matplotlib/__init__.py", line
134, in <module>
from matplotlib.rcsetup import (defaultParams,
File "/usr/lib/pymodules/python2.7/matplotlib/rcsetup.py", line 19,
in <module>
from matplotlib.colors import is_color_like
File "/usr/lib/pymodules/python2.7/matplotlib/colors.py", line 52, in <module>
import numpy as np
File "/usr/lib/pymodules/python2.7/numpy/__init__.py", line 137, in <module>
import add_newdocs
File "/usr/lib/pymodules/python2.7/numpy/add_newdocs.py", line 9, in <module>
from numpy.lib import add_newdoc
File "/usr/lib/pymodules/python2.7/numpy/lib/__init__.py", line 13,
in <module>
from polynomial import *
File "/usr/lib/pymodules/python2.7/numpy/lib/polynomial.py", line
17, in <module>
from numpy.linalg import eigvals, lstsq
File "/usr/lib/pymodules/python2.7/numpy/linalg/__init__.py", line
48, in <module>
from linalg import *
File "/usr/lib/pymodules/python2.7/numpy/linalg/linalg.py", line 23,
in <module>
from numpy.linalg import lapack_lite
ImportError: libblas.so.3gf: cannot open shared object file: No such
file or directory
----
BUGFIX:
running
$ sudo ln -s /usr/lib/libblas.so.3 /usr/lib/libblas.so.3gf
seems to fix the problem.
darkestkhan
--- System information. ---
Architecture: amd64
Kernel: Linux 3.2.0-2-amd64
Debian Release: wheezy/sid
650 testing ftp.debian.org
600 unstable ftp.debian.org
--- Package information. ---
Depends (Version) | Installed
=============================-+-===========
libatlas3-base | 3.8.4-5
Package's Recommends field is empty.
Package's Suggests field is empty.
--- End Message ---
--- Begin Message ---
fixed 676657 3.8.4-6
forcemerge 676614
<http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=676614> 676657
fixed 664667 <http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=664667>
forcemerge 635520
<http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=635520> 671834
<http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=671834>
severity 635520
<http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=635520> normal
fixed 659784
fixed 581412
thanks
--- End Message ---
