Your message dated Thu, 31 Jul 2014 23:20:03 +0000
with message-id <[email protected]>
and subject line Bug#756695: fixed in r-cran-hdf5 1.6.10-3
has caused the Debian Bug report #756695,
regarding r-cran-hdf5: [hdf5 transition] please support hdf5 1.8.13 new
packaging layout
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
756695: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756695
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-cran-hdf5
Version: 1.6.10-2
Severity: important
Tags: patch
User: [email protected]
Usertags: HDF5-transition
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Hi,
The hdf5 1.8.13 package in experimental features a new layout for
headers and libraries, so that all the binary packages are now
co-installable.
Please find attached a patch proposal to support both the current
and the new layouts.
Because this bug is in the way of the hdf5 transition I intend to NMU
in a few days. I apologize for the urge, and I hope this approach won't
offend you. Please tell me otherwise.
Kind regards,
_g.
- -- System Information:
Debian Release: jessie/sid
APT prefers testing
APT policy: (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Kernel: Linux 3.14-1-486
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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diff -Nru r-cran-hdf5-1.6.10/debian/changelog r-cran-hdf5-1.6.10/debian/changelog
--- r-cran-hdf5-1.6.10/debian/changelog 2014-07-31 20:05:40.000000000 +0200
+++ r-cran-hdf5-1.6.10/debian/changelog 2014-07-26 15:38:05.000000000 +0200
@@ -1,3 +1,11 @@
+r-cran-hdf5 (1.6.10-2.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Support hdf5 1.8.13 new packaging layout.
+ * New patch with-hdf5.patch: fix HDF5LDFLAGS in configure.in.
+
+ -- Gilles Filippini <[email protected]> Sat, 26 Jul 2014 15:33:24 +0200
+
r-cran-hdf5 (1.6.10-2) unstable; urgency=low
* debian/control: Set Build-Depends: to current R version
diff -Nru r-cran-hdf5-1.6.10/debian/patches/series r-cran-hdf5-1.6.10/debian/patches/series
--- r-cran-hdf5-1.6.10/debian/patches/series 1970-01-01 01:00:00.000000000 +0100
+++ r-cran-hdf5-1.6.10/debian/patches/series 2014-07-26 15:35:23.000000000 +0200
@@ -0,0 +1 @@
+with-hdf5.patch
diff -Nru r-cran-hdf5-1.6.10/debian/patches/with-hdf5.patch r-cran-hdf5-1.6.10/debian/patches/with-hdf5.patch
--- r-cran-hdf5-1.6.10/debian/patches/with-hdf5.patch 1970-01-01 01:00:00.000000000 +0100
+++ r-cran-hdf5-1.6.10/debian/patches/with-hdf5.patch 2014-07-26 15:45:04.000000000 +0200
@@ -0,0 +1,26 @@
+Index: r-cran-hdf5-1.6.10/configure.in
+===================================================================
+--- r-cran-hdf5-1.6.10.orig/configure.in 2011-05-11 02:02:04.000000000 +0200
++++ r-cran-hdf5-1.6.10/configure.in 2014-07-26 15:36:44.251388180 +0200
+@@ -15,7 +15,7 @@
+ if test -n "$with_hdf5"; then
+ HDF5LDFLAGS="-L${with_hdf5}/lib"
+ if test `uname -s` != "Darwin"; then
+- HDF5LDFLAGS="-Wl,-rpath,${with_hdf5}/lib"
++ HDF5LDFLAGS="-Wl,-L,${with_hdf5}/lib"
+ fi
+ HDF5CPPFLAGS=-I${with_hdf5}/include
+ fi
+Index: r-cran-hdf5-1.6.10/configure
+===================================================================
+--- r-cran-hdf5-1.6.10.orig/configure 2011-05-11 02:02:04.000000000 +0200
++++ r-cran-hdf5-1.6.10/configure 2014-07-26 15:44:58.304739655 +0200
+@@ -2201,7 +2201,7 @@
+ if test -n "$with_hdf5"; then
+ HDF5LDFLAGS="-L${with_hdf5}/lib"
+ if test `uname -s` != "Darwin"; then
+- HDF5LDFLAGS="-Wl,-rpath,${with_hdf5}/lib"
++ HDF5LDFLAGS="-Wl,-L,${with_hdf5}/lib"
+ fi
+ HDF5CPPFLAGS=-I${with_hdf5}/include
+ fi
diff -Nru r-cran-hdf5-1.6.10/debian/rules r-cran-hdf5-1.6.10/debian/rules
--- r-cran-hdf5-1.6.10/debian/rules 2014-07-31 20:05:40.000000000 +0200
+++ r-cran-hdf5-1.6.10/debian/rules 2014-07-31 15:38:31.000000000 +0200
@@ -5,5 +5,6 @@
include /usr/share/R/debian/r-cran.mk
-
-
+ifneq ($(wildcard /usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial/libhdf5.so),)
+ extraInstallFlags := "--configure-args=--with-hdf5=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial"
+endif
diff -Nru r-cran-hdf5-1.6.10/debian/source/format r-cran-hdf5-1.6.10/debian/source/format
--- r-cran-hdf5-1.6.10/debian/source/format 1970-01-01 01:00:00.000000000 +0100
+++ r-cran-hdf5-1.6.10/debian/source/format 2014-07-26 16:40:37.000000000 +0200
@@ -0,0 +1 @@
+3.0 (quilt)
--- End Message ---
--- Begin Message ---
Source: r-cran-hdf5
Source-Version: 1.6.10-3
We believe that the bug you reported is fixed in the latest version of
r-cran-hdf5, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <[email protected]> (supplier of updated r-cran-hdf5 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 31 Jul 2014 18:10:54 -0500
Source: r-cran-hdf5
Binary: r-cran-hdf5
Architecture: source i386
Version: 1.6.10-3
Distribution: unstable
Urgency: low
Maintainer: Dirk Eddelbuettel <[email protected]>
Changed-By: Dirk Eddelbuettel <[email protected]>
Description:
r-cran-hdf5 - GNU R package interfacing the NCSA HDF5 library
Closes: 756695
Changes:
r-cran-hdf5 (1.6.10-3) unstable; urgency=low
.
[ Gilles Filippini ]
.
* Support hdf5 1.8.13 new packaging layout.
* New patch with-hdf5.patch: fix HDF5LDFLAGS in configure.in.
.
[ Dirk Eddelbuettel ]
.
* Applied patch by Gilles Filippini to permit hdf5 transition
(Closes: #756695)
.
* debian/control: Set Build-Depends: to current R version
* debian/control: Set Standards-Version: to current version
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