Your message dated Sun, 01 Oct 2017 16:50:00 +0000
with message-id <[email protected]>
and subject line Bug#871083: fixed in python-pysam 0.12.0.1+ds-1
has caused the Debian Bug report #871083,
regarding python-pysam: FTBFS: Test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
871083: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=871083
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-pysam
Version: 0.11.2.2+ds-3
Severity: serious
Tags: buster sid
User: [email protected]
Usertags: qa-ftbfs-20170805 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/<<BUILDDIR>>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line
> 149, in setUp
> self.check_version()
> File "/<<BUILDDIR>>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line
> 139, in check_version
> samtools_version))
> ValueError: versions of pysam.samtools and samtools differ: 1.4.1 != 1.5
>
> ----------------------------------------------------------------------
> Ran 760 tests in 56.829s
>
> FAILED (SKIP=5, errors=2)
> (0, 0)
> E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd
> /<<BUILDDIR>>/python-pysam-0.11.2.2+ds/.pybuild/pythonX.Y_2.7/build;
> python2.7 -m nose
> dh_auto_test: pybuild --test -i python{version} -p 2.7 returned exit code 13
> debian/rules:39: recipe for target 'override_dh_auto_test' failed
The full build log is available from:
http://aws-logs.debian.net/2017/08/05/python-pysam_0.11.2.2+ds-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: python-pysam
Source-Version: 0.12.0.1+ds-1
We believe that the bug you reported is fixed in the latest version of
python-pysam, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Afif Elghraoui <[email protected]> (supplier of updated python-pysam package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 01 Oct 2017 12:30:30 -0400
Source: python-pysam
Binary: python-pysam python3-pysam python-pysam-tests
Architecture: source
Version: 0.12.0.1+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Afif Elghraoui <[email protected]>
Description:
python-pysam - interface for the SAM/BAM sequence alignment and mapping format
(
python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping
format (
python3-pysam - interface for the SAM/BAM sequence alignment and mapping
format (
Closes: 834856 871083
Changes:
python-pysam (0.12.0.1+ds-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Drop patch applied upstream
* Standards-Version: 4.1.0 (no changes needed)
* Apply upstream patch to fix test suite
* Use pytest instead of nosetest
.
[ Afif Elghraoui ]
* New upstream version
Closes: #871083, #834856
* Bump htslib suite minimum versions
* Use Build Profiles to mark build-dependencies needed only for tests
* Temporarily skip a failing test (reported upstream)
.
[ Steffen Moeller ]
* created debian/upstream/metadata: references to registries
Checksums-Sha1:
e5015d8272b4afe9140d65096ee2cc278a89061e 2719 python-pysam_0.12.0.1+ds-1.dsc
260fae1b00dd50f3e9c4857d8b1949252621a593 2497809
python-pysam_0.12.0.1+ds.orig.tar.gz
0dc19cd5d9258e653c45e670591b5acbd32b9775 9208
python-pysam_0.12.0.1+ds-1.debian.tar.xz
cf12f5fe2baa5339f44820a5280ebeca87e2c984 7770
python-pysam_0.12.0.1+ds-1_source.buildinfo
Checksums-Sha256:
0d3fbe29381b2ed0322f3ca82c75cf06c67cb60ceae129d1d64a3116c8120a2f 2719
python-pysam_0.12.0.1+ds-1.dsc
d907eed435553e25444b327cb2d6a5f1105dca9091a37bc8fa3914c81d7995fe 2497809
python-pysam_0.12.0.1+ds.orig.tar.gz
7aad6d8e3a06de6b9803c3abff3b9962fbaa070206141b74d29ae3227f957a0a 9208
python-pysam_0.12.0.1+ds-1.debian.tar.xz
2d05857708c308d1b1c0d2a5a9ec41ae649f3d86ad410ebfe20f3004d3f62722 7770
python-pysam_0.12.0.1+ds-1_source.buildinfo
Files:
214b950a34ece269c0b6b681485f1bc6 2719 python optional
python-pysam_0.12.0.1+ds-1.dsc
978d0b0e2655316bd6b618d3a40c0c6a 2497809 python optional
python-pysam_0.12.0.1+ds.orig.tar.gz
afe901fdfea24c717ba718d646cab31c 9208 python optional
python-pysam_0.12.0.1+ds-1.debian.tar.xz
54d41f9379f98addfff483949cd4916e 7770 python optional
python-pysam_0.12.0.1+ds-1_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=OdnR
-----END PGP SIGNATURE-----
--- End Message ---
