Your message dated Sun, 01 Oct 2017 16:50:00 +0000 with message-id <[email protected]> and subject line Bug#834856: fixed in python-pysam 0.12.0.1+ds-1 has caused the Debian Bug report #834856, regarding python-pysam: FTBFS on 32-bit architectures: segmentation fault in testsuite to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 834856: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=834856 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: python-pysam Version: 0.9.1.4+ds-1 Severity: grave Justification: renders package unusable Dear Maintainer, Python-pysam packages failed to build on March 24th on a mips64el architecture. Here is the tail of the failed-build log: >testAlt (VariantFile_test.TestParsing) ... ok >testChrom (VariantFile_test.TestParsing) ... ok >testFilter (VariantFile_test.TestParsing) ... ok >testFormat (VariantFile_test.TestParsing) ... ok >testId (VariantFile_test.TestParsing) ... ok >testInfo (VariantFile_test.TestParsing) ... Illegal instruction >E: pybuild pybuild:274: test: plugin distutils failed with: exit code=132: cd >/«BUILDDIR»/python-pysam-0.9.1.4+ds/.pybuild/pythonX.Y_2.7/build; python2.7 -m >nose >dh_auto_test: pybuild --test -i python{version} -p 2.7 returned exit code 13 >debian/rules:36: recipe for target 'override_dh_auto_test' failed >make[1]: *** [override_dh_auto_test] Error 25 >make[1]: Leaving directory '/«BUILDDIR»/python-pysam-0.9.1.4+ds' >debian/rules:30: recipe for target 'build-arch' failed >make: *** [build-arch] Error 2 >dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 Precise cause of failure during "testInfo" is unknown atm. Here is a link to the full failed-build log: https://buildd.debian.org/status/fetch.php?pkg=python-pysam&arch=mips64el&ver=0.9.1.4%2Bds-1&stamp=1469339179 Thank you, Jonathan Jackson -- System Information: Package: python-pysam 0.9.1.4+ds-1 Version: 0.9.1.4+ds-1 Source Version: 0.9.1.4+ds-1 Distribution: sid Machine Architecture: mipsel Host Architecture: mips64el Build Architecture: mips64el
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--- Begin Message ---Source: python-pysam Source-Version: 0.12.0.1+ds-1 We believe that the bug you reported is fixed in the latest version of python-pysam, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Afif Elghraoui <[email protected]> (supplier of updated python-pysam package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 01 Oct 2017 12:30:30 -0400 Source: python-pysam Binary: python-pysam python3-pysam python-pysam-tests Architecture: source Version: 0.12.0.1+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Afif Elghraoui <[email protected]> Description: python-pysam - interface for the SAM/BAM sequence alignment and mapping format ( python-pysam-tests - interface for the SAM/BAM sequence alignment and mapping format ( python3-pysam - interface for the SAM/BAM sequence alignment and mapping format ( Closes: 834856 871083 Changes: python-pysam (0.12.0.1+ds-1) unstable; urgency=medium . [ Andreas Tille ] * Drop patch applied upstream * Standards-Version: 4.1.0 (no changes needed) * Apply upstream patch to fix test suite * Use pytest instead of nosetest . [ Afif Elghraoui ] * New upstream version Closes: #871083, #834856 * Bump htslib suite minimum versions * Use Build Profiles to mark build-dependencies needed only for tests * Temporarily skip a failing test (reported upstream) . [ Steffen Moeller ] * created debian/upstream/metadata: references to registries Checksums-Sha1: e5015d8272b4afe9140d65096ee2cc278a89061e 2719 python-pysam_0.12.0.1+ds-1.dsc 260fae1b00dd50f3e9c4857d8b1949252621a593 2497809 python-pysam_0.12.0.1+ds.orig.tar.gz 0dc19cd5d9258e653c45e670591b5acbd32b9775 9208 python-pysam_0.12.0.1+ds-1.debian.tar.xz cf12f5fe2baa5339f44820a5280ebeca87e2c984 7770 python-pysam_0.12.0.1+ds-1_source.buildinfo Checksums-Sha256: 0d3fbe29381b2ed0322f3ca82c75cf06c67cb60ceae129d1d64a3116c8120a2f 2719 python-pysam_0.12.0.1+ds-1.dsc d907eed435553e25444b327cb2d6a5f1105dca9091a37bc8fa3914c81d7995fe 2497809 python-pysam_0.12.0.1+ds.orig.tar.gz 7aad6d8e3a06de6b9803c3abff3b9962fbaa070206141b74d29ae3227f957a0a 9208 python-pysam_0.12.0.1+ds-1.debian.tar.xz 2d05857708c308d1b1c0d2a5a9ec41ae649f3d86ad410ebfe20f3004d3f62722 7770 python-pysam_0.12.0.1+ds-1_source.buildinfo Files: 214b950a34ece269c0b6b681485f1bc6 2719 python optional python-pysam_0.12.0.1+ds-1.dsc 978d0b0e2655316bd6b618d3a40c0c6a 2497809 python optional python-pysam_0.12.0.1+ds.orig.tar.gz afe901fdfea24c717ba718d646cab31c 9208 python optional python-pysam_0.12.0.1+ds-1.debian.tar.xz 54d41f9379f98addfff483949cd4916e 7770 python optional python-pysam_0.12.0.1+ds-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE6rcjomb2J+aAVWFfWbIwbzr53cEFAlnRGZUQHGFmaWZAZGVi aWFuLm9yZwAKCRBZsjBvOvndwdHxD/49V6IvH2CBIFPyrEkslBZUk8K7WHnA7bUj ybW1dzobQilCAaXKjREJrCE56ZkoLC4PrkHycsKlb3ae1bdIyTb9/Q0QJ0OVEwBz O0a47wZlkfmy1Lgh7+GWH39t419Tj9SGSnM4oSHNXjrXBktVySAFvCDSj+jWWNa4 Gsw3Vswjs9gz9/Ep5pXWgcezFUCPnUrA3jl4JcOpj34ieVHRqEj51PBkTacn8Y40 76kKJNx0WTaKVH70yYyhD/TpUiQAYzPJXq6CoW0Fb4ZGGT0CMljKVnxHCS3hB3/C lN8lI3jNhLtk2DfI5eAuzasynq4JollKvWoy3B0G1Yubt4LvOSQiRX1/vjEm/4Zk HThsdzMvY2H8kFqXzAusgoV+q6CWOqjYx8af/EbiWCtM6QrwHzqUDhrt020j6a5w UYOM3PsGsCJNsmIcw53zgGbp6iDp9cP8sKGOqiITdBRBMTpiT0MSUtdYw6zCWH45 Tthf+kFMxA1eIK1WKmEXLVb7ra/VzOGgLA5ygYmVWObS05kVFLIkPWLfs2f0HTOH S9bNwENzPN9PxVyB+dj7gyuDRBEedhgLvNAffGPYO8Lc3j3yhsvm6RM1ehGWk4S0 DvrnauWu5HG2yyrBZ2lL65lvfprPyULJP+r3yiAapj9+PKq/gvmd0umjaVUKC23i oOWdFZ0pMQ== =OdnR -----END PGP SIGNATURE-----
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