Your message dated Fri, 30 Aug 2024 19:33:33 +0000
with message-id <[email protected]>
and subject line Bug#1080124: fixed in pyfastx 2.1.0-2
has caused the Debian Bug report #1080124,
regarding pyfastx: FTBFS: ERROR: test_module
(tests.test_fasta.FastaTest.test_module)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1080124: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1080124
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:pyfastx
Version: 2.1.0-1
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules binary
dh binary --buildsystem pybuild --with python3
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:268: UserWarning:
Unknown distribution option: 'test_suite'
warnings.warn(msg)
running config
debian/rules execute_before_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# FIXME: we pull the zran files from indexed-gzip source package, which
# does not expose this file in its binary package, so this is vendored
# for the moment. Upstream originally vendored these files straight in
# src/, but stopped for whatever reason, possibly introduction of a
# library somewhere at some point. See #1038995 to track packaging.
cp --no-clobber debian/zran/* src/
cp: warning: behavior of -n is non-portable and may change in future; use
--update=none instead
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:268: UserWarning:
Unknown distribution option: 'test_suite'
warnings.warn(msg)
running build
running build_py
copying pyfastxcli.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build
running build_ext
building 'pyfastx' extension
creating build
creating build/temp.linux-x86_64-cpython-312
creating build/temp.linux-x86_64-cpython-312/build
creating build/temp.linux-x86_64-cpython-312/<<BUILDDIR>>
creating build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>
creating build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/fakeys.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fakeys.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/fasta.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fasta.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
/<<PKGBUILDDIR>>/src/fasta.c: In function ‘pyfastx_fasta_fetch’:
/<<PKGBUILDDIR>>/src/fasta.c:443:34: warning: comparison of integer expressions
of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Py_ssize_t’ {aka ‘long
int’} [-Wsign-compare]
443 | if (strlen(name) >= self->index->cache_name.m) {
| ^~
/<<PKGBUILDDIR>>/src/fasta.c: In function ‘pyfastx_fasta_composition’:
/<<PKGBUILDDIR>>/src/fasta.c:1058:13: warning: unused variable ‘i’
[-Wunused-variable]
1058 | int i;
| ^
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/fastq.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fastq.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/fastx.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fastx.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/fqkeys.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fqkeys.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/index.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/index.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/kseq.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/kseq.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/module.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/module.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
/<<PKGBUILDDIR>>/src/module.c: In function ‘pyfastx_reverse_complement’:
/<<PKGBUILDDIR>>/src/module.c:57:32: warning: passing argument 1 of
‘reverse_complement_seq’ discards ‘const’ qualifier from pointer target type
[-Wdiscarded-qualifiers]
57 | reverse_complement_seq(s);
| ^
In file included from /<<PKGBUILDDIR>>/src/fastq.h:8,
from /<<PKGBUILDDIR>>/src/module.c:3:
/<<PKGBUILDDIR>>/src/util.h:16:35: note: expected ‘char *’ but argument is of
type ‘const char *’
16 | void reverse_complement_seq(char *seq);
| ~~~~~~^~~
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/read.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/read.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/sequence.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/sequence.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
/<<PKGBUILDDIR>>/src/sequence.c: In function ‘pyfastx_sequence_get_fullseq’:
/<<PKGBUILDDIR>>/src/sequence.c:90:32: warning: comparison of integer
expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘Py_ssize_t’
{aka ‘long int’} [-Wsign-compare]
90 | if (strlen(self->name) >= self->index->cache_name.m) {
| ^~
/<<PKGBUILDDIR>>/src/sequence.c: In function ‘pyfastx_sequence_subscript’:
/<<PKGBUILDDIR>>/src/sequence.c:431:20: warning: variable ‘slice_len’ set but
not used [-Wunused-but-set-variable]
431 | Py_ssize_t slice_len;
| ^~~~~~~~~
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/util.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/util.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/zran.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/zran.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
-I/usr/include/python3.12 -c /<<PKGBUILDDIR>>/src/zran_file_util.c -o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/zran_file_util.o -Wno-unused-result
-D_FILE_OFFSET_BITS=64 -D_LFS64_LARGEFILE -D_LARGEFILE64_SOURCE
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection
-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fakeys.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fasta.o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fastq.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fastx.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/fqkeys.o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/index.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/kseq.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/module.o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/read.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/sequence.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/util.o
build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/zran.o build/temp.linux-x86_64-cpython-312/<<PKGBUILDDIR>>/src/zran_file_util.o -L/usr/lib/x86_64-linux-gnu -o
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pyfastx.cpython-312-x86_64-linux-gnu.so -lsqlite3
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build;
python3.12 -m unittest discover -v
test_id_exception (tests.test_fakeys.IdentifierTest.test_id_exception) ... ok
test_key_identifier (tests.test_fakeys.IdentifierTest.test_key_identifier) ...
ok
test_key_repr (tests.test_fakeys.IdentifierTest.test_key_repr) ... ok
test_key_slice (tests.test_fakeys.IdentifierTest.test_key_slice) ... ok
test_keys_filter (tests.test_fakeys.IdentifierTest.test_keys_filter) ... ok
test_keys_sort (tests.test_fakeys.IdentifierTest.test_keys_sort) ... ok
test_build (tests.test_fasta.FastaTest.test_build) ... ok
test_exception (tests.test_fasta.FastaTest.test_exception) ... ok
test_fasta (tests.test_fasta.FastaTest.test_fasta) ... ok
test_iter_full_name (tests.test_fasta.FastaTest.test_iter_full_name) ... ok
test_iter_object (tests.test_fasta.FastaTest.test_iter_object) ... ok
test_iter_tuple (tests.test_fasta.FastaTest.test_iter_tuple) ... ok
test_iter_upper (tests.test_fasta.FastaTest.test_iter_upper) ... ok
test_iter_upper_full_name
(tests.test_fasta.FastaTest.test_iter_upper_full_name) ... ok
test_key_func (tests.test_fasta.FastaTest.test_key_func) ... ok
test_module (tests.test_fasta.FastaTest.test_module) ... ERROR
test_no_upper (tests.test_fasta.FastaTest.test_no_upper) ... ok
test_repr (tests.test_fasta.FastaTest.test_repr) ... ok
test_seq_fetch (tests.test_fasta.FastaTest.test_seq_fetch) ... ok
test_seq_flank (tests.test_fasta.FastaTest.test_seq_flank) ... ok
test_seq_type (tests.test_fasta.FastaTest.test_seq_type) ... ok
test_statistics (tests.test_fasta.FastaTest.test_statistics) ... ok
test_build (tests.test_fastq.FastqTest.test_build) ... ok
test_exception (tests.test_fastq.FastqTest.test_exception) ... ok
test_fastq (tests.test_fastq.FastqTest.test_fastq) ... ok
test_full_name (tests.test_fastq.FastqTest.test_full_name) ... ok
test_iter_object (tests.test_fastq.FastqTest.test_iter_object) ... ok
test_iter_tuple (tests.test_fastq.FastqTest.test_iter_tuple) ... ok
test_negative (tests.test_fastq.FastqTest.test_negative) ... ok
test_platform (tests.test_fastq.FastqTest.test_platform) ... ok
test_read_len (tests.test_fastq.FastqTest.test_read_len) ... ok
test_repr (tests.test_fastq.FastqTest.test_repr) ... ok
test_exception (tests.test_fastx.FastxTest.test_exception) ... ok
test_fasta_iter (tests.test_fastx.FastxTest.test_fasta_iter) ... ok
test_fasta_upper (tests.test_fastx.FastxTest.test_fasta_upper) ... ok
test_fastq_iter (tests.test_fastx.FastxTest.test_fastq_iter) ... ok
test_fastx_repr (tests.test_fastx.FastxTest.test_fastx_repr) ... ok
test_exception (tests.test_fqkeys.FastxTest.test_exception) ... ok
test_fastq_key (tests.test_fqkeys.FastxTest.test_fastq_key) ... ok
test_read (tests.test_read.ReadTest.test_read) ... ok
test_read_description (tests.test_read.ReadTest.test_read_description) ... ok
test_read_raw (tests.test_read.ReadTest.test_read_raw) ... ok
test_read_seq (tests.test_read.ReadTest.test_read_seq) ... ok
test_repr (tests.test_read.ReadTest.test_repr) ... ok
test_full_compo (tests.test_sequence.SequenceTest.test_full_compo) ... ok
test_seq_by_index (tests.test_sequence.SequenceTest.test_seq_by_index) ... ok
test_seq_by_key (tests.test_sequence.SequenceTest.test_seq_by_key) ... ok
test_seq_content (tests.test_sequence.SequenceTest.test_seq_content) ... ok
test_seq_exception (tests.test_sequence.SequenceTest.test_seq_exception) ... ok
test_seq_iter (tests.test_sequence.SequenceTest.test_seq_iter) ... ok
test_seq_raw (tests.test_sequence.SequenceTest.test_seq_raw) ... ok
test_seq_repr (tests.test_sequence.SequenceTest.test_seq_repr) ... ok
test_seq_reverse_complement
(tests.test_sequence.SequenceTest.test_seq_reverse_complement) ... ok
test_seq_slice (tests.test_sequence.SequenceTest.test_seq_slice) ... ok
test_seq_by_index
(tests.test_sequence_error.SequenceErrorTest.test_seq_by_index) ... ok
test_seq_by_key (tests.test_sequence_error.SequenceErrorTest.test_seq_by_key)
... ok
======================================================================
ERROR: test_module (tests.test_fasta.FastaTest.test_module)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_fasta.py",
line 56, in test_module
with open(join(root_dir, 'src', 'version.h')) as fh:
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory:
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/../src/version.h'
----------------------------------------------------------------------
Ran 56 tests in 3.388s
FAILED (errors=1)
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover
-v
dh_auto_test: error: pybuild --test -i python{version} -p 3.12 returned exit
code 13
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202408/
About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--- End Message ---
--- Begin Message ---
Source: pyfastx
Source-Version: 2.1.0-2
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
pyfastx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated pyfastx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 30 Aug 2024 20:31:18 +0200
Source: pyfastx
Architecture: source
Version: 2.1.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1080124
Changes:
pyfastx (2.1.0-2) unstable; urgency=medium
.
* d/rules: make use of indexed-gzip's zran files.
* d/zran/: delete: debian's vendored zran is now unnecessary.
* d/copyright: remove reference to debian's zran.
* d/control: declare compliance to standards version 4.7.0.
* use_debian_packaged_indexed-gzip.patch: forwarding not needed.
* d/rules: the test suite needs src/version.h.
This change also includes a cleanup step that gets rid of a spare
non.fa fasta file that clutter the test bed after the run.
(Closes: #1080124)
* d/rules: use the portable variant of cp -n.
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Files:
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