Your message dated Thu, 25 Sep 2025 16:49:42 +0000
with message-id <[email protected]>
and subject line Bug#1103315: fixed in kineticstools
0.6.1+git20220223.1326a4d+dfsg-7
has caused the Debian Bug report #1103315,
regarding kineticstools: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1103315: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103315
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:kineticstools
Version: 0.6.1+git20220223.1326a4d+dfsg-6
Severity: important
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning:
Unknown distribution option: 'tests_require'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build' (and
everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf .pytest_cache
rm -rf kineticsTools.egg-info
rm -f nosetests.xml
rm -f bin/ipdSummary
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning:
Unknown distribution option: 'tests_require'
warnings.warn(msg)
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning:
Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteCommon.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/ModificationDecode.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/PositiveControlEnricher.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/BasicLdaEnricher.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/ResultWriter.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/MultiSiteDetection.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/ipdSummary.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/pipelineTools.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/summarizeModifications.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/MedakaLdaEnricher.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/ReferenceUtils.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/KineticWorker.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/WorkerProcess.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/loader.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/MixtureEstimationMethods.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/sharedArray.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/ipdModel.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
copying kineticsTools/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools
creating
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/gather_bigwig.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/tasks
copying kineticsTools/tasks/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/tasks
creating
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/internal
copying kineticsTools/internal/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/internal
running egg_info
creating kineticsTools.egg-info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning:
Package 'kineticsTools.resources' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'kineticsTools.resources' as an importable
package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to
distribute this
package, please make sure that 'kineticsTools.resources' is explicitly
added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation
page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'kineticsTools.resources' to be distributed and are
already explicitly excluding 'kineticsTools.resources' via
`find_namespace_packages(...)/find_namespace` or
`find_packages(...)/find`,
you can try to use `exclude_package_data`, or
`include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools
documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
creating
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/P6-C4.npz.gz ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP2-C2.npz.gz ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/SP3-C3.npz.gz ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources
copying kineticsTools/resources/unknown.npz.gz ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources
running build_ext
building 'kineticsTools/tree_predict' extension
creating build/temp.linux-x86_64-cpython-313/kineticsTools
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c
kineticsTools/tree_predict.c -o
build/temp.linux-x86_64-cpython-313/kineticsTools/tree_predict.o -O3 -shared
-std=c99
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-function
[too-long-redacted] cpython-313-x86_64-linux-gnu.so
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root
/<<PKGBUILDDIR>>/debian/python3-kineticstools
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning:
Unknown distribution option: 'tests_require'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90:
SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running egg_info
writing kineticsTools.egg-info/PKG-INFO
writing dependency_links to kineticsTools.egg-info/dependency_links.txt
writing entry points to kineticsTools.egg-info/entry_points.txt
writing requirements to kineticsTools.egg-info/requires.txt
writing top-level names to kineticsTools.egg-info/top_level.txt
reading manifest file 'kineticsTools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSES.txt'
writing manifest file 'kineticsTools.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning:
Package 'kineticsTools.resources' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'kineticsTools.resources' as an importable
package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to
distribute this
package, please make sure that 'kineticsTools.resources' is explicitly
added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation
page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'kineticsTools.resources' to be distributed and are
already explicitly excluding 'kineticsTools.resources' via
`find_namespace_packages(...)/find_namespace` or
`find_packages(...)/find`,
you can try to use `exclude_package_data`, or
`include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools
documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
running build_ext
running install_lib
creating
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages
creating
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/MultiSiteCommon.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/ModificationDecode.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/PositiveControlEnricher.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/BasicLdaEnricher.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/ResultWriter.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/MultiSiteDetection.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/ipdSummary.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
creating
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/tasks
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/tasks/gather_bigwig.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/tasks
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/tasks/__init__.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/tasks
creating
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/internal
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/internal/__init__.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/internal
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/pipelineTools.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/summarizeModifications.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/MedakaLdaEnricher.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/ReferenceUtils.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
creating
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/resources
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources/SP2-C2.npz.gz
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/resources
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources/P6-C4.npz.gz
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/resources
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources/unknown.npz.gz
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/resources
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/resources/SP3-C3.npz.gz
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/resources
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/KineticWorker.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/WorkerProcess.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/loader.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/MixtureEstimationMethods.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/tree_predict.cpython-313-x86_64-linux-gnu.so
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/sharedArray.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/ipdModel.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
copying
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_kineticstools/build/kineticsTools/__init__.py
->
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/MultiSiteCommon.py
to MultiSiteCommon.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/ModificationDecode.py
to ModificationDecode.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/PositiveControlEnricher.py
to PositiveControlEnricher.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/BasicLdaEnricher.py
to BasicLdaEnricher.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/ResultWriter.py
to ResultWriter.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/MultiSiteDetection.py
to MultiSiteDetection.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/ipdSummary.py
to ipdSummary.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/tasks/gather_bigwig.py
to gather_bigwig.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/tasks/__init__.py
to __init__.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/internal/__init__.py
to __init__.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/pipelineTools.py
to pipelineTools.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/summarizeModifications.py
to summarizeModifications.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/MedakaLdaEnricher.py
to MedakaLdaEnricher.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/ReferenceUtils.py
to ReferenceUtils.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/KineticWorker.py
to KineticWorker.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/WorkerProcess.py
to WorkerProcess.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/loader.py
to loader.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/MixtureEstimationMethods.py
to MixtureEstimationMethods.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/sharedArray.py
to sharedArray.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/ipdModel.py
to ipdModel.cpython-313.pyc
byte-compiling
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools/__init__.py
to __init__.cpython-313.pyc
running install_egg_info
Copying kineticsTools.egg-info to
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/lib/python3.13/dist-packages/kineticsTools-0.8.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing ipdSummary script to
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/bin
Installing summarizeModifications script to
/<<PKGBUILDDIR>>/debian/python3-kineticstools/usr/bin
debian/rules execute_after_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p /<<PKGBUILDDIR>>/debian/kineticstools/usr/bin
mv debian/python3-kineticstools/usr/bin/*
/<<PKGBUILDDIR>>/debian/kineticstools/usr/bin
mkdir -p /<<PKGBUILDDIR>>/debian/kineticstools/usr/share/man//man1
rst2man doc/manual.rst >
/<<PKGBUILDDIR>>/debian/kineticstools/usr/share/man//man1/ipdSummary.1
doc/manual.rst:53: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
doc/manual.rst:55: (WARNING/2) "math" role not supported
mkdir -p debian/kineticstools-data/usr/share/kineticstools
# There is probably a simpler way, but that should do for the moment.
set -e \
; for libdir in debian/python3-kineticstools/usr/lib/python3.* \
; do rm -rf
/<<PKGBUILDDIR>>/debian/kineticstools-data/usr/share/kineticstools/resources
\
; mv ${libdir}/dist-packages/kineticsTools/resources
/<<PKGBUILDDIR>>/debian/kineticstools-data/usr/share/kineticstools/resources \
; done
rm debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml
rm: cannot remove
'debian/python3-kineticstools/usr/lib/python3.*/dist-packages/nosetests.xml':
No such file or directory
make[1]: *** [debian/rules:26: execute_after_dh_auto_install] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:16: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202504/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:kineticstools, so that this is still
visible in the BTS web page for this package.
Notes:
* When a package is built with the nocheck profile, it means:
- DEB_BUILD_OPTIONS=nocheck
(the tests should be skipped during the build)
- DEB_BUILD_PROFILES=nocheck
(Build-Depends marked <!nocheck> are not installed)
- The contents of the package is allowed to be different than normal
* This category of bugs was going to be RC for trixie, but
according to the Release Managers it's a little bit late in the
release cycle to introduce a bunch of RC bugs of this type.
* In addition to the above, this package also fails when
using DEB_BUILD_OPTIONS=nocheck alone. In this mode:
- DEB_BUILD_OPTIONS=nocheck
(the tests should be skipped during the build)
- Build-Depends marked <!nocheck> are installed as normal
- The contents of the package should not change compared
to a regular build
Thanks.
--- End Message ---
--- Begin Message ---
Source: kineticstools
Source-Version: 0.6.1+git20220223.1326a4d+dfsg-7
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
kineticstools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated kineticstools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 25 Sep 2025 18:10:00 +0200
Source: kineticstools
Architecture: source
Version: 0.6.1+git20220223.1326a4d+dfsg-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1103315
Changes:
kineticstools (0.6.1+git20220223.1326a4d+dfsg-7) unstable; urgency=medium
.
* Team upload.
[ Alexandre Detiste ]
* Drop python3-uritools backport(-ish) from build dependencies.
* Drop obsolete "Rules-Requires-Root: no".
* Update Standards-Version.
[ Santiago Vila ]
* Fix FTBFS with with nocheck build profile. Closes: #1103315.
* Enable build profile job in Salsa CI.
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