Your message dated Wed, 01 Jul 2026 22:19:07 +0000
with message-id <[email protected]>
and subject line Bug#1141070: fixed in snakemake 7.32.4-12
has caused the Debian Bug report #1141070,
regarding snakemake: FTBFS: KeyError
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1141070: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1141070
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: snakemake
Version: 7.32.4-11
Severity: serious
Tags: ftbfs
_______________________________ test_config_ref
________________________________
self = <jsonschema.validators._RefResolver object at 0x7f39ef516710>
url = 'file:/tmp/pytest-of-
wrar/pytest-0/test_config_ref0/schema/bar.schema.yaml'
def resolve_from_url(self, url):
"""
Resolve the given URL.
"""
url, fragment = urldefrag(url)
if not url:
url = self.base_uri
try:
> document = self.store[url]
^^^^^^^^^^^^^^^
/usr/lib/python3/dist-packages/jsonschema/validators.py:1118:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = {'http://json-schema.org/draft-06/schema': {'$schema': 'http://json-
schema.org/draft-06/schema#', '$id': 'http://json-...ult': 'json', '$ref':
'/tmp/pytest-of-
wrar/pytest-0/test_config_ref0/schema/bar.schema.json#/definitions/jsonbar'}}}}}}
uri = 'file:/tmp/pytest-of-
wrar/pytest-0/test_config_ref0/schema/bar.schema.yaml'
def __getitem__(self, uri):
> return self.store[self.normalize(uri)]
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
E KeyError: 'file:///tmp/pytest-of-
wrar/pytest-0/test_config_ref0/schema/bar.schema.yaml'
There is some output in the earlier log that looks like a crash log so it's
possible that some binary modules are the real cause.
-- System Information:
Debian Release: forky/sid
APT prefers unstable-debug
APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing'),
(101, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 7.0.12+deb14.1-amd64 (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
--- End Message ---
--- Begin Message ---
Source: snakemake
Source-Version: 7.32.4-12
Done: Rebecca N. Palmer <[email protected]>
We believe that the bug you reported is fixed in the latest version of
snakemake, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Rebecca N. Palmer <[email protected]> (supplier of updated snakemake
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 01 Jul 2026 22:06:28 +0100
Source: snakemake
Architecture: source
Version: 7.32.4-12
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Rebecca N. Palmer <[email protected]>
Closes: 1141070
Changes:
snakemake (7.32.4-12) unstable; urgency=medium
.
* Re-enable R/rpy2 tests.
* Make config schema loading from local files
Python 3.14 compatible. (Closes: #1141070)
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