Your message dated Sat, 05 Sep 2026 06:06:05 +0000
with message-id <[email protected]>
and subject line Bug#1105421: fixed in ivar 1.4.4+dfsg-4
has caused the Debian Bug report #1105421,
regarding ivar: FTBFS with make --shuffle=reverse: dh_auto_test: error: make
-j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 returned exit code 2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1105421: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1105421
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ivar
Version: 1.4.4+dfsg-1
Severity: minor
Tags: trixie sid ftbfs
User: [email protected]
Usertags: ftbfs-shuffle
Hi,
GNU Make now has a --shuffle option that simulates non-deterministic ordering
of target prerequisites. See
https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous
work in Debian by Santiago Vila:
https://people.debian.org/~sanvila/make-shuffle/
This package fails to build with make --shuffle=reverse.
This is likely to be caused by a missing dependency in
debian/rules or an upstream Makefile.
More information about this mass bug filing is available at
https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle
Relevant part (hopefully):
> make[5]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests'
> Makefile:1268: update target 'check_strand_variants.log' due to: target does
> not exist
> p='check_strand_variants'; \
> b='check_strand_variants'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_strand_variants.log"
> in */*) am__odir=`echo "./check_strand_variants.log" | sed 's|/[^/]*$||'`;;
> *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_strand_variants.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_strand_variants
> Makefile:1261: update target 'check_quality_trim_unpaired.log' due to: target
> does not exist
> p='check_quality_trim_unpaired'; \
> b='check_quality_trim_unpaired'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case
> "check_quality_trim_unpaired.log" in */*) am__odir=`echo
> "./check_quality_trim_unpaired.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_quality_trim_unpaired.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_quality_trim_unpaired
> Makefile:1254: update target 'check_consensus_min_insert_threshold.log' due
> to: target does not exist
> p='check_consensus_min_insert_threshold'; \
> b='check_consensus_min_insert_threshold'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case
> "check_consensus_min_insert_threshold.log" in */*) am__odir=`echo
> "./check_consensus_min_insert_threshold.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_consensus_min_insert_threshold.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_consensus_min_insert_threshold
> Makefile:1247: update target 'check_amplicon_search.log' due to: target does
> not exist
> p='check_amplicon_search'; \
> b='check_amplicon_search'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_amplicon_search.log"
> in */*) am__odir=`echo "./check_amplicon_search.log" | sed 's|/[^/]*$||'`;;
> *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_amplicon_search.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_amplicon_search
> Makefile:1240: update target 'check_interval_tree.log' due to: target does
> not exist
> p='check_interval_tree'; \
> b='check_interval_tree'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_interval_tree.log" in
> */*) am__odir=`echo "./check_interval_tree.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_interval_tree.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_interval_tree
> Makefile:1233: update target 'check_isize_trim.log' due to: target does not
> exist
> p='check_isize_trim'; \
> b='check_isize_trim'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_isize_trim.log" in
> */*) am__odir=`echo "./check_isize_trim.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_isize_trim.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_isize_trim
> Makefile:1226: update target 'check_primer_trim_edge_cases.log' due to:
> target does not exist
> p='check_primer_trim_edge_cases'; \
> b='check_primer_trim_edge_cases'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case
> "check_primer_trim_edge_cases.log" in */*) am__odir=`echo
> "./check_primer_trim_edge_cases.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_primer_trim_edge_cases.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_primer_trim_edge_cases
> Makefile:1219: update target 'check_unpaired_trim.log' due to: target does
> not exist
> p='check_unpaired_trim'; \
> b='check_unpaired_trim'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_unpaired_trim.log" in
> */*) am__odir=`echo "./check_unpaired_trim.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_unpaired_trim.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_unpaired_trim
> Makefile:1212: update target 'check_common_variants.log' due to: target does
> not exist
> p='check_common_variants'; \
> b='check_common_variants'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_common_variants.log"
> in */*) am__odir=`echo "./check_common_variants.log" | sed 's|/[^/]*$||'`;;
> *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_common_variants.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_common_variants
> Makefile:1205: update target 'check_variants.log' due to: target does not
> exist
> p='check_variants'; \
> b='check_variants'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_variants.log" in */*)
> am__odir=`echo "./check_variants.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f; log='check_variants.log'; if test
> -n ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_variants
> Makefile:1198: update target 'check_removereads.log' due to: target does not
> exist
> p='check_removereads'; \
> b='check_removereads'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_removereads.log" in
> */*) am__odir=`echo "./check_removereads.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_removereads.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> FAIL: check_removereads
> Makefile:1191: update target 'check_getmasked.log' due to: target does not
> exist
> p='check_getmasked'; \
> b='check_getmasked'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_getmasked.log" in */*)
> am__odir=`echo "./check_getmasked.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f; log='check_getmasked.log'; if test
> -n ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; *)
> am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_getmasked
> Makefile:1184: update target 'check_primer_bed.log' due to: target does not
> exist
> p='check_primer_bed'; \
> b='check_primer_bed'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_primer_bed.log" in
> */*) am__odir=`echo "./check_primer_bed.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_primer_bed.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_primer_bed
> Makefile:1177: update target 'check_consensus_seq_id.log' due to: target does
> not exist
> p='check_consensus_seq_id'; \
> b='check_consensus_seq_id'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_consensus_seq_id.log"
> in */*) am__odir=`echo "./check_consensus_seq_id.log" | sed 's|/[^/]*$||'`;;
> *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_consensus_seq_id.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_consensus_seq_id
> Makefile:1170: update target 'check_consensus_min_depth.log' due to: target
> does not exist
> p='check_consensus_min_depth'; \
> b='check_consensus_min_depth'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case
> "check_consensus_min_depth.log" in */*) am__odir=`echo
> "./check_consensus_min_depth.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_consensus_min_depth.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_consensus_min_depth
> Makefile:1163: update target 'check_consensus_threshold.log' due to: target
> does not exist
> p='check_consensus_threshold'; \
> b='check_consensus_threshold'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case
> "check_consensus_threshold.log" in */*) am__odir=`echo
> "./check_consensus_threshold.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_consensus_threshold.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_consensus_threshold
> Makefile:1156: update target 'check_allele_depth.log' due to: target does not
> exist
> p='check_allele_depth'; \
> b='check_allele_depth'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_allele_depth.log" in
> */*) am__odir=`echo "./check_allele_depth.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_allele_depth.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_allele_depth
> Makefile:1149: update target 'check_consensus.log' due to: target does not
> exist
> p='check_consensus'; \
> b='check_consensus'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_consensus.log" in */*)
> am__odir=`echo "./check_consensus.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f; log='check_consensus.log'; if test
> -n ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; *)
> am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_consensus
> Makefile:1142: update target 'check_quality_trim.log' due to: target does not
> exist
> p='check_quality_trim'; \
> b='check_quality_trim'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_quality_trim.log" in
> */*) am__odir=`echo "./check_quality_trim.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_quality_trim.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_quality_trim
> Makefile:1135: update target 'check_trim.log' due to: target does not exist
> p='check_trim'; \
> b='check_trim'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_trim.log" in */*)
> am__odir=`echo "./check_trim.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;;
> esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p
> "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f";
> then dir=; else dir="./"; fi; tst=$dir$f; log='check_trim.log'; if test -n
> ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*)
> am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash
> ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_trim
> Makefile:1128: update target 'check_primer_trim.log' due to: target does not
> exist
> p='check_primer_trim'; \
> b='check_primer_trim'; \
> case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case
> $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn=
> red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then
> am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif
> test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then
> am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m';
> grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m';
> std='[m'; fi; }; srcdir=.; export srcdir; case "check_primer_trim.log" in
> */*) am__odir=`echo "./check_primer_trim.log" | sed 's|/[^/]*$||'`;; *)
> am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" ||
> /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./;
> elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f;
> log='check_primer_trim.log'; if test -n ''; then
> am__collect_skipped_logs='--collect-skipped-logs no'; else
> am__collect_skipped_logs=''; fi; if test -n ''; then
> am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in
> *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;;
> *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \
> --log-file $b.log --trs-file $b.trs \
> --color-tests "$am__color_tests" $am__collect_skipped_logs
> --enable-hard-errors "$am__enable_hard_errors" --expect-failure
> "$am__expect_failure" -- \
> "$tst"
> PASS: check_primer_trim
> Makefile:975: update target 'test-suite.log' due to: target does not exist
> bases='check_primer_trim.log check_trim.log check_quality_trim.log
> check_consensus.log check_allele_depth.log check_consensus_threshold.log
> check_consensus_min_depth.log check_consensus_seq_id.log check_primer_bed.log
> check_getmasked.log check_removereads.log check_variants.log
> check_common_variants.log check_unpaired_trim.log
> check_primer_trim_edge_cases.log check_isize_trim.log check_interval_tree.log
> check_amplicon_search.log check_consensus_min_insert_threshold.log
> check_quality_trim_unpaired.log check_strand_variants.log'; bases=`for i in
> $bases; do echo $i; done | sed 's/\.log$//'`; bases=`echo $bases`; \
> am__f_ok () { test -f "$1" && test -r "$1"; }; \
> redo_bases=`for i in $bases; do \
> am__f_ok $i.trs && am__f_ok $i.log || echo $i; \
> done`; \
> if test -n "$redo_bases"; then \
> redo_logs=`for i in $redo_bases; do echo $i.log; done`; \
> redo_results=`for i in $redo_bases; do echo $i.trs; done`; \
> if (target_option=n; case ${target_option-} in ?) ;; *) echo
> "am__make_running_with_option: internal error: invalid" "target option
> '${target_option-}' specified" >&2; exit 1;; esac; has_opt=no;
> sane_makeflags=$MAKEFLAGS; if { if test -z '5'; then false; elif test -n
> 'x86_64-pc-linux-gnu'; then true; elif test -n '4.4.1' && test -n
> '/build/reproducible-path/ivar-1.4.4+dfsg/tests'; then true; else false; fi;
> }; then sane_makeflags=$MFLAGS; else case $MAKEFLAGS in *\\[\ \ ]*) bs=\\;
> sane_makeflags=`printf '%s\n' "$MAKEFLAGS" | sed "s/$bs$bs[$bs $bs
> ]*//g"`;; esac; fi; skip_next=no; strip_trailopt () { flg=`printf '%s\n'
> "$flg" | sed "s/$1.*$//"`; }; for flg in $sane_makeflags; do test $skip_next
> = yes && { skip_next=no; continue; }; case $flg in *=*|--*) continue;; -*I)
> strip_trailopt 'I'; skip_next=yes;; -*I?*) strip_trailopt 'I';; -*O)
> strip_trailopt 'O'; skip_next=yes;; -*O?*) strip_trailopt 'O';; -*l)
> strip_trailopt 'l'; skip_next=yes;; -*l?*) strip_trailopt 'l';; -[dEDm])
> skip_next=yes;; -[JT]) skip_next=yes;; esac; case $flg in *$target_option*)
> has_opt=yes; break;; esac; done; test $has_opt = yes); then :; else \
> rm -f $redo_logs && rm -f $redo_results || exit 1; \
> fi; \
> fi; \
> if test -n "$am__remaking_logs"; then \
> echo "fatal: making test-suite.log: possible infinite" \
> "recursion detected" >&2; \
> elif test -n "$redo_logs"; then \
> am__remaking_logs=yes make $redo_logs; \
> fi; \
> if (target_option=n; case ${target_option-} in ?) ;; *) echo
> "am__make_running_with_option: internal error: invalid" "target option
> '${target_option-}' specified" >&2; exit 1;; esac; has_opt=no;
> sane_makeflags=$MAKEFLAGS; if { if test -z '5'; then false; elif test -n
> 'x86_64-pc-linux-gnu'; then true; elif test -n '4.4.1' && test -n
> '/build/reproducible-path/ivar-1.4.4+dfsg/tests'; then true; else false; fi;
> }; then sane_makeflags=$MFLAGS; else case $MAKEFLAGS in *\\[\ \ ]*) bs=\\;
> sane_makeflags=`printf '%s\n' "$MAKEFLAGS" | sed "s/$bs$bs[$bs $bs
> ]*//g"`;; esac; fi; skip_next=no; strip_trailopt () { flg=`printf '%s\n'
> "$flg" | sed "s/$1.*$//"`; }; for flg in $sane_makeflags; do test $skip_next
> = yes && { skip_next=no; continue; }; case $flg in *=*|--*) continue;; -*I)
> strip_trailopt 'I'; skip_next=yes;; -*I?*) strip_trailopt 'I';; -*O)
> strip_trailopt 'O'; skip_next=yes;; -*O?*) strip_trailopt 'O';; -*l)
> strip_trailopt 'l'; skip_next=yes;; -*l?*) strip_trailopt 'l';; -[dEDm])
> skip_next=yes;; -[JT]) skip_next=yes;; esac; case $flg in *$target_option*)
> has_opt=yes; break;; esac; done; test $has_opt = yes); then :; else \
> st=0; \
> errmsg="fatal: making test-suite.log: failed to create"; \
> for i in $redo_bases; do \
> test -f $i.trs && test -r $i.trs \
> || { echo "$errmsg $i.trs" >&2; st=1; }; \
> test -f $i.log && test -r $i.log \
> || { echo "$errmsg $i.log" >&2; st=1; }; \
> done; \
> test $st -eq 0 || exit 1; \
> fi
> case $- in *e*) set +e;; esac; { mgn= red= grn= lgn= blu= brg= std=;
> am__color_tests=no; if test "X" = Xno; then am__color_tests=no; elif test "X"
> = Xalways; then am__color_tests=yes; elif test "X$TERM" != Xdumb && { test -t
> 1; } 2>/dev/null; then am__color_tests=yes; fi; if test $am__color_tests =
> yes; then red='[0;31m'; grn='[0;32m'; lgn='[1;32m'; blu='[1;34m';
> mgn='[0;35m'; brg='[1m'; std='[m'; fi; }; bases='check_primer_trim.log
> check_trim.log check_quality_trim.log check_consensus.log
> check_allele_depth.log check_consensus_threshold.log
> check_consensus_min_depth.log check_consensus_seq_id.log check_primer_bed.log
> check_getmasked.log check_removereads.log check_variants.log
> check_common_variants.log check_unpaired_trim.log
> check_primer_trim_edge_cases.log check_isize_trim.log check_interval_tree.log
> check_amplicon_search.log check_consensus_min_insert_threshold.log
> check_quality_trim_unpaired.log check_strand_variants.log'; bases=`for i in
> $bases; do echo $i; done | sed 's/\.log$//'`; bases=`echo $bases`; \
> ws='[ ]'; \
> results=`for b in $bases; do echo $b.trs; done`; \
> test -n "$results" || results=/dev/null; \
> all=` grep "^$ws*:test-result:" $results | wc -l`; \
> pass=` grep "^$ws*:test-result:$ws*PASS" $results | wc -l`; \
> fail=` grep "^$ws*:test-result:$ws*FAIL" $results | wc -l`; \
> skip=` grep "^$ws*:test-result:$ws*SKIP" $results | wc -l`; \
> xfail=`grep "^$ws*:test-result:$ws*XFAIL" $results | wc -l`; \
> xpass=`grep "^$ws*:test-result:$ws*XPASS" $results | wc -l`; \
> error=`grep "^$ws*:test-result:$ws*ERROR" $results | wc -l`; \
> if test `expr $fail + $xpass + $error` -eq 0; then \
> success=true; \
> else \
> success=false; \
> fi; \
> br='==================='; br=$br$br$br$br; \
> result_count () \
> { \
> if test x"$1" = x"--maybe-color"; then \
> maybe_colorize=yes; \
> elif test x"$1" = x"--no-color"; then \
> maybe_colorize=no; \
> else \
> echo "test-suite.log: invalid 'result_count' usage" >&2; exit 4; \
> fi; \
> shift; \
> desc=$1 count=$2; \
> if test $maybe_colorize = yes && test $count -gt 0; then \
> color_start=$3 color_end=$std; \
> else \
> color_start= color_end=; \
> fi; \
> echo "${color_start}# $desc $count${color_end}"; \
> }; \
> create_testsuite_report () \
> { \
> result_count $1 "TOTAL:" $all "$brg"; \
> result_count $1 "PASS: " $pass "$grn"; \
> result_count $1 "SKIP: " $skip "$blu"; \
> result_count $1 "XFAIL:" $xfail "$lgn"; \
> result_count $1 "FAIL: " $fail "$red"; \
> result_count $1 "XPASS:" $xpass "$red"; \
> result_count $1 "ERROR:" $error "$mgn"; \
> }; \
> output_system_information () \
> { \
> echo; \
> { uname -a | mawk '{ \
> printf "System information (uname -a):"; \
> for (i = 1; i < NF; ++i) \
> { \
> if (i != 2) \
> printf " %s", $i; \
> } \
> printf "\n"; \
> }'; } 2>&1; \
> if test -r /etc/os-release; then \
> echo "Distribution information (/etc/os-release):"; \
> sed 8q /etc/os-release; \
> elif test -r /etc/issue; then \
> echo "Distribution information (/etc/issue):"; \
> cat /etc/issue; \
> fi; \
> }; \
> please_report () \
> { \
> echo "Some test(s) failed. Please report this to [email protected],"; \
> echo "together with the test-suite.log file (gzipped) and your system"; \
> echo "information. Thanks."; \
> }; \
> { \
> echo "ivar 1.4.4: tests/test-suite.log" | \
> { sed 's/.*/ & /;h;s/./=/g;p;x;s/ *$//;p;g' && echo; };
> \
> create_testsuite_report --no-color; \
> output_system_information; \
> echo; \
> echo ".. contents:: :depth: 2"; \
> echo; \
> for b in $bases; do echo $b; done \
> | mawk ' function fatal(msg) { print "fatal: making test-suite.log: " msg
> | "cat >&2"; exit 1; } function rst_section(header) { print header; len =
> length(header); for (i = 1; i <= len; i = i + 1) printf "="; printf "\n\n"; }
> { copy_in_global_log = 1; global_test_result = "RUN"; while ((rc = (getline
> line < ($0 ".trs"))) != 0) { if (rc < 0) fatal("failed to read from " $0
> ".trs"); if (line ~ /^[ ]*:global-test-result:[ ]*/) { sub("^[
> ]*:global-test-result:[ ]*", "", line); sub("[ ]*$", "", line);
> global_test_result = line; } else if (line ~ /^[
> ]*:copy-in-global-log:[ ]*[nN][oO]/) copy_in_global_log = 0; }; if
> (copy_in_global_log) { rst_section(global_test_result ": " $0); while ((rc =
> (getline line < ($0 ".log"))) != 0) { if (rc < 0) fatal("failed to read from
> " $0 ".log"); print line; }; printf "\n"; }; close ($0 ".trs"); close ($0
> ".log"); }'; \
> } >test-suite.log.tmp || exit 1; \
> mv test-suite.log.tmp test-suite.log; \
> if $success; then \
> col="$grn"; \
> else \
> col="$red"; \
> test x"$VERBOSE" = x || cat test-suite.log; \
> fi; \
> echo "${col}$br${std}"; \
> echo "${col}Testsuite summary"' for ivar 1.4.4'"${std}"; \
> echo "${col}$br${std}"; \
> create_testsuite_report --maybe-color; \
> echo "$col$br$std"; \
> if $success; then :; else \
> echo "${col}See tests/test-suite.log for debugging.${std}";\
> if test -n "[email protected]"; then \
> please_report | sed -e "s/^/${col}/" -e s/'$'/"${std}"/; \
> fi; \
> echo "$col$br$std"; \
> fi; \
> $success || exit 1
> ======================================
> ivar 1.4.4: tests/test-suite.log
> ======================================
>
> # TOTAL: 21
> # PASS: 20
> # SKIP: 0
> # XFAIL: 0
> # FAIL: 1
> # XPASS: 0
> # ERROR: 0
>
> System information (uname -a): Linux 6.1.0-32-cloud-amd64 #1 SMP
> PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64
> Distribution information (/etc/os-release):
> PRETTY_NAME="Debian GNU/Linux trixie/sid"
> NAME="Debian GNU/Linux"
> VERSION_CODENAME=trixie
> ID=debian
> HOME_URL="https://www.debian.org/";
> SUPPORT_URL="https://www.debian.org/support";
> BUG_REPORT_URL="https://bugs.debian.org/";
>
> .. contents:: :depth: 2
>
> FAIL: check_removereads
> =======================
>
> Found 8 primers in BED file
> Writing to ../data/test.trimmed.masked.bam
> [E::idx_find_and_load] Could not retrieve index file for
> '../data/test.trimmed.sorted.bam'
> Number of references: 1
> Reference Name: Consensus_ZI-27_threshold_0_quality_20
> Reference Length: 10086
> Using Region: Consensus_ZI-27_threshold_0_quality_20
> Sorted By Coordinate
> Results:
> 0 reads were removed.
> FAIL check_removereads (exit status: 1)
>
> ============================================================================
> Testsuite summary for ivar 1.4.4
> ============================================================================
> # TOTAL: 21
> # PASS: 20
> # SKIP: 0
> # XFAIL: 0
> # FAIL: 1
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See tests/test-suite.log for debugging.
> Some test(s) failed. Please report this to [email protected],
> together with the test-suite.log file (gzipped) and your system
> information. Thanks.
> ============================================================================
> make[5]: *** [Makefile:976: test-suite.log] Error 1 shuffle=reverse
> make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests'
> make[4]: *** [Makefile:1111: check-TESTS] Error 2 shuffle=reverse
> make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests'
> make[3]: *** [Makefile:1323: check-am] Error 2 shuffle=reverse
> make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests'
> make[2]: *** [Makefile:377: check-recursive] Error 1 shuffle=reverse
> make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg'
> dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1
> returned exit code 2
The full build log is available from:
http://qa-logs.debian.net/2025/05/05/shuffle/reverse/ivar_1.4.4+dfsg-1_unstable_reverse.log
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
--- End Message ---
--- Begin Message ---
Source: ivar
Source-Version: 1.4.4+dfsg-4
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
ivar, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated ivar package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 05 Sep 2026 07:31:46 +0200
Source: ivar
Architecture: source
Version: 1.4.4+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1105421
Changes:
ivar (1.4.4+dfsg-4) unstable; urgency=medium
.
* Build-Depends: architecture-is-64-bit, architecture-is-little-endian
This removes the need for fixing i386 autopkgtest issue, it was
never build on s390x - so do not create workload on this autobuilder
* Fix test suite to build with make --shuffle=reverse
Closes: #1105421
* No attempt to build for i386 in Salsa CI
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Files:
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5e6d8caf114872ae298751280ef3c08a 47276 science optional
ivar_1.4.4+dfsg-4.debian.tar.xz
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