Package: r-bioc-limma Version: 3.16.7~dfsg-1 The latest version of this package grew an XS-Testsuite header which made it get picked up by our automatic Jenkins runners. However, it seems that they fail without giving any useful output [1]:
| adt-run: & dsc0t-upstream: [---------------------------------------- | adt-run1: teeing to stdout: /tmp/adt-run.KRNBNH/dsc0t-upstream-testtmp/test_stdout, stderr: /tmp/adt-run.KRNBNH/dsc0t-upstream-testtmp/test_stderr | adt-run1: testbed executing test finished with exit status 1 | adt-run: & dsc0t-upstream: ----------------------------------------] | adt-run: & dsc0t-upstream: - - - - - - - - - - results - - - - - - - - - - | dsc0t-upstream FAIL non-zero exit status 1 I installed r-bioc-limma into a clean VM and ran the test manually with sh -x: | ~/r-bioc-limma-3.16.7~dfsg⟫ sh -ex debian/tests/upstream | + mktemp -d | + TEMPORARY_DIR=/tmp/tmp.ngEhS1PLVf | + cd /tmp/tmp.ngEhS1PLVf | + cp /usr/share/doc/r-bioc-limma/tests/limma-Tests.R.gz /usr/share/doc/r-bioc-limma/tests/limma-Tests.Rout.save.gz . | + basename limma-Tests.R.gz .gz | + zcat limma-Tests.R.gz | + basename limma-Tests.R.gz .gz | + R CMD BATCH limma-Tests.R Then I cd'ed into the temporary directory and tried with --verbose: /tmp/tmp.AHzbzjmcPP⟫ R --verbose CMD BATCH limma-Tests.R /tmp/tmp.AHzbzjmcPP⟫ I finally found limma-Tests.Rout which seems to have some detail at last. At the end it says: | > cor.out <- duplicateCorrelation(M) | Loading required package: statmod | Error: could not find function "mixedModel2Fit" | In addition: Warning message: | In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : | there is no package called ‘statmod’ | Execution halted apt-cache search statmod does not give anything. Is that a missing dependency or some missing configuration? Also, could the autopkgtest perhaps do something like "R [...] || { cat <logfile>; exit 1 }" to make the test fail usefully? Thank you! Martin P.S. r-bioc-edger fails in a similar way, bug coming. [1] https://jenkins.qa.ubuntu.com/job/trusty-adt-r-bioc-limma/1/ARCH=amd64,label=adt/ -- Martin Pitt | http://www.piware.de Ubuntu Developer (www.ubuntu.com) | Debian Developer (www.debian.org) -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org