Hi Andrew, many thanks for your quick reply and for your willingness to look into the issue.
Best regards, Sascha On 07/08/2015 16:23, Andrew Whitwham wrote: > Hi Sascha, > > Thanks for letting us know. I will take a look but it may be a few days > before I can do anything about it. > > Regards, > > Andrew > > > On 07/08/15 15:26, Sascha Steinbiss wrote: >> Dear James and Andrew, >> >> I am writing to kindly bring the following Staden build issue to your >> attention. The Debian automated build system is currently unable to >> build the code from source due to multiple declarations of identically >> named functions with different parameter and return types. >> We were wondering if you could help out there -- many thanks in advance! >> >> Best wishes >> Sascha >> >> -- Forwarded email below -- >> >> Date: Sat, 1 Aug 2015 07:28:32 +0200 >> From: Andreas Tille <[email protected]> >> To: "Chris West (Faux)" <[email protected]>, >> [email protected], James Bonfield <[email protected]> >> Cc: Tim Booth <[email protected]> >> Subject: Re: Bug#793514: FTBFS: conflicting types for append_int >> >> Hi Staden developers, >> >> as you can see in this Debian bug report the current staden release is >> in conflict with the latest releases of staden-io-lib. Both dafine the >> same function but with different code (not only the header is >> different). >> >> Any help is welcome >> >> Andreas. >> >> On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote: >>> Source: staden >>> Version: 2.0.0+b10-1.1 >>> Severity: serious >>> Tags: sid >>> Justification: fails to build from source >>> User: [email protected] >>> Usertags: ftbfs >>> >>> Dear Maintainer, >>> >>> The package fails to build: >>> >>> sam_index.c:321:14: error: conflicting types for ‘append_int’ >>> static char *append_int(char *cp, int i) { >>> ^ >>> In file included from /usr/include/io_lib/scram.h:52:0, >>> from sam_pileup.h:4, >>> from sam_index.c:17: >>> /usr/include/io_lib/bam.h:755:16: note: previous declaration of >>> ‘append_int’ was here >>> unsigned char *append_int(unsigned char *cp, int32_t i); >>> ^ >>> /staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target >>> 'sam_index.o' failed >>> make[2]: *** [sam_index.o] Error 1 >>> make[2]: Leaving directory '/staden-2.0.0+b10/gap5' >>> >>> >>> Full build log: >>> https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html >>> >>> -- System Information: >>> Debian Release: stretch/sid >>> APT prefers unstable >>> APT policy: (500, 'unstable') >>> Architecture: amd64 (x86_64) >>> >>> Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores) >>> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) >>> Shell: /bin/sh linked to /bin/dash >>> Init: systemd (via /run/systemd/system) >>> >>> _______________________________________________ >>> Debian-med-packaging mailing list >>> [email protected] >>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging >>> >> > -- Dr Sascha Steinbiss Senior Bioinformatician Parasite Genomics Wellcome Trust Sanger Institute Genome Campus, Hinxton, Cambridge, CB10 1SA, UK -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
