Hi Sascha,
I see what has happened. A new version of iolib was released without
releasing a compatible version of the Staden Package. The code is
ready, it just needs releasing.
I'll see what I can do.
Thanks,
Andrew
On 07/08/15 16:35, Sascha Steinbiss wrote:
Hi Andrew,
many thanks for your quick reply and for your willingness to look into
the issue.
Best regards,
Sascha
On 07/08/2015 16:23, Andrew Whitwham wrote:
Hi Sascha,
Thanks for letting us know. I will take a look but it may be a few days
before I can do anything about it.
Regards,
Andrew
On 07/08/15 15:26, Sascha Steinbiss wrote:
Dear James and Andrew,
I am writing to kindly bring the following Staden build issue to your
attention. The Debian automated build system is currently unable to
build the code from source due to multiple declarations of identically
named functions with different parameter and return types.
We were wondering if you could help out there -- many thanks in advance!
Best wishes
Sascha
-- Forwarded email below --
Date: Sat, 1 Aug 2015 07:28:32 +0200
From: Andreas Tille <[email protected]>
To: "Chris West (Faux)" <[email protected]>,
[email protected], James Bonfield <[email protected]>
Cc: Tim Booth <[email protected]>
Subject: Re: Bug#793514: FTBFS: conflicting types for append_int
Hi Staden developers,
as you can see in this Debian bug report the current staden release is
in conflict with the latest releases of staden-io-lib. Both dafine the
same function but with different code (not only the header is
different).
Any help is welcome
Andreas.
On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote:
Source: staden
Version: 2.0.0+b10-1.1
Severity: serious
Tags: sid
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs
Dear Maintainer,
The package fails to build:
sam_index.c:321:14: error: conflicting types for ‘append_int’
static char *append_int(char *cp, int i) {
^
In file included from /usr/include/io_lib/scram.h:52:0,
from sam_pileup.h:4,
from sam_index.c:17:
/usr/include/io_lib/bam.h:755:16: note: previous declaration of
‘append_int’ was here
unsigned char *append_int(unsigned char *cp, int32_t i);
^
/staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target
'sam_index.o' failed
make[2]: *** [sam_index.o] Error 1
make[2]: Leaving directory '/staden-2.0.0+b10/gap5'
Full build log:
https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html
-- System Information:
Debian Release: stretch/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
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