Le Sat, Sep 30, 2017 at 09:13:10AM +0200, Graham Inggs a écrit : > > Rebuilding the arch:all package r-bioc-biocgenerics against r-base-dev > 3.4.1.20170921-1 or 3.4.2-1 seems to cause the eventual failure of > autopkgtests in r-bioc-iranges and r-bioc-variantannotation. > > IRanges RUnit Tests - 91 test functions, 2 errors, 0 failures > ERROR in test_AtomicList_general: Error in match.arg(method) : 'arg' > must be of length 1 > ERROR in test_AtomicList_numerical: Error in match.arg(method) : 'arg' > must be of length 1
Hi Graham, this reminds me the transition from R 3.3.3 to 3.4.0, although the error message is not the same. (See <https://bugs.debian.org/858183>). The order of builds may matter (because of subtelties of the S4 system). Have you tried rebuilding r-bioc-iranges in a system after the rebuilt r-bioc-biocgenerics package was installed ? Also, I note that Upstream has not switched to R 3.4.2 yet (as of 2017-09-28) (<http://bioconductor.org/checkResults/devel/bioc-LATEST/BiocGenerics/malbec1-checksrc.html>) Therefore, the issue may still be unknown upstream. If the problems persists, I suggest reporting them at <https://support.bioconductor.org>. Cheers, Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan
