Control: reassign -1 src:r-bioc-s4vectors 0.14.3-1 Control: affects -1 = r-bioc-iranges r-bioc-variantannotation Control: tags -1 + fixed-upstream Control: clone -1 -2 Control: reassign -2 src:r-bioc-iranges 2.10.2-1
On 30 September 2017 at 14:30, Dirk Eddelbuettel <[email protected]> wrote: > Out of date. We have 3.4.2 now. 3.4.1.20170921-1 is the version where the regression appeared. > But I see no evidence of anything at fault at r-base-core. I think you have > a case of wrongly ordered builds of dependencies here _in the client package_ > so please reassign the bug report. Upstream have released workarounds in S4Vectors 0.14.6 and IRanges 2.10.4, so reassigning. See commit from S4Vectors below: diff --git a/R/List-comparison.R b/R/List-comparison.R index c096a00..6f788fb 100644 --- a/R/List-comparison.R +++ b/R/List-comparison.R @@ -43,7 +43,16 @@ setMethod("pcompareRecursively", "list", function(x) TRUE) return(OP1_Vector_method(x, ...)) } compress_ans <- !is(x, "SimpleList") - ANS_CONSTRUCTOR(lapply(x, OP1, ...), compress=compress_ans) + ## Note that we should just be able to do + ## y <- lapply(x, OP1, ...) + ## instead of the extremely obfuscated form below (which, in a bug-free + ## world, should be equivalent to the simple form above). + ## However, because of a regression in R 3.4.2, using the simple form + ## above doesn't seem to work properly if OP1 is a generic function with + ## dispatch on ... (e.g. order()). The form below seems to work though, + ## so we use it as a temporary workaround. + y <- lapply(x, function(xi) do.call(OP1, list(xi, ...))) + ANS_CONSTRUCTOR(y, compress=compress_ans) } ### Apply a binary operator.
