Source: deal.ii
Version: 8.5.1-3
Severity: normal
deal.ii no longer builds against PETSc (petsc 3.9).
The error message is
cd /home/drew/projects/test/deal.ii-8.5.1/obj-x86_64-linux-gnu/source/lac &&
/usr/bin/c++ -DDEBUG
-I/home/drew/projects/test/deal.ii-8.5.1/obj-x86_64-linux-gnu/source/lac
-I/home/drew/projects/test/deal.ii-8.5.1/obj-x86_64-linux-gnu/include
-I/home/drew/projects/test/deal.ii-8.5.1/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/trilinos
-I/usr/include/hdf5/openmpi -I/usr/include/scotch -I/usr/include/suitesparse
-I/usr/include/petsc -I/usr/lib/x86_64-linux-gnu/hdf5/openmpi/include
-I/usr/include/oce -I/usr/include/slepc -pedantic -fPIC -Wall -Wextra
-Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch
-Woverloaded-virtual -Wno-long-long -Wno-implicit-fallthrough
-Wno-placement-new -Wno-deprecated-declarations -Wno-literal-suffix
-fopenmp-simd -std=c++14 -g -O2
-fdebug-prefix-map=/home/drew/projects/test/deal.ii-8.5.1=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -Wno-nonnull-compare -Wno-address -pthread
-Wno-unused-local-typedefs -Og -ggdb -Wa,--compress-debug-sections -o
CMakeFiles/obj_lac_debug.dir/petsc_solver.cc.o -c
/home/drew/projects/test/deal.ii-8.5.1/source/lac/petsc_solver.cc
/home/drew/projects/test/deal.ii-8.5.1/source/lac/petsc_solver.cc: In member
function ‘void dealii::PETScWrappers::SparseDirectMUMPS::solve(const
dealii::PETScWrappers::MatrixBase&, dealii::PETScWrappers::VectorBase&, const
dealii::PETScWrappers::VectorBase&)’:
/home/drew/projects/test/deal.ii-8.5.1/source/lac/petsc_solver.cc:774:16:
error: ‘PCFactorSetMatSolverPackage’ was not declared in this scope
ierr = PCFactorSetMatSolverPackage (solver_data->pc, MATSOLVERMUMPS);
^~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/drew/projects/test/deal.ii-8.5.1/source/lac/petsc_solver.cc:774:16:
note: suggested alternative: ‘PCFactorSetMatSolverType’
ierr = PCFactorSetMatSolverPackage (solver_data->pc, MATSOLVERMUMPS);
^~~~~~~~~~~~~~~~~~~~~~~~~~~
PCFactorSetMatSolverType
/home/drew/projects/test/deal.ii-8.5.1/source/lac/petsc_solver.cc:783:16:
error: ‘PCFactorSetUpMatSolverPackage’ was not declared in this scope
ierr = PCFactorSetUpMatSolverPackage (solver_data->pc);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/drew/projects/test/deal.ii-8.5.1/source/lac/petsc_solver.cc:783:16:
note: suggested alternative: ‘PCFactorSetUpMatSolverType’
ierr = PCFactorSetUpMatSolverPackage (solver_data->pc);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
PCFactorSetUpMatSolverType
make[3]: *** [source/lac/CMakeFiles/obj_lac_debug.dir/build.make:677:
source/lac/CMakeFiles/obj_lac_debug.dir/petsc_solver.cc.o] Error 1
make[3]: Leaving directory
'/home/drew/projects/test/deal.ii-8.5.1/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:3170:
source/lac/CMakeFiles/obj_lac_debug.dir/all] Error 2
This is because of changes in the PETSc API.
Upstream deal.ii has already patched git, e.g.
https://github.com/dealii/dealii/commit/1d7b0421c9037dd59fbd889312f311ac8e62f8aa
https://github.com/dealii/dealii/commit/3eaaf572b92df60e9647a081191d7182ff7ab67b
petsc 3.9 is currently in experimental. This bug will become serious
once we drop petsc 3.9 into unstable.
This bug can be considered a request to upload the new upstream
version deal.ii 9.0, which is coming soon (9.0.0-rc5 is now released).
-- System Information:
Debian Release: buster/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.16.0-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8),
LANGUAGE=en_AU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
