Source: skesa Version: 2.3.0-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200225 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. This rebuild was done by building only architecture:any binary packages (binary-arch target of debian/rules). Relevant part (hopefully): > c++ -std=c++11 -o skesa skesa.o glb_align.o -L > /<<PKGBUILDDIR>>/NGS/vdb_out/lib64 -lncbi-ngs-c++ -lncbi-vdb -L > /<<PKGBUILDDIR>>/NGS/ngs_out/lib64 -lngs-c++-static -Wl,-Bstatic > -lboost_program_options -lboost_iostreams -lboost_regex -lboost_timer > -lboost_chrono -lboost_system -Wl,-Bdynamic -lrt -ldl -lm -lpthread -lz > -Wl,-z,relro > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_entropy_init' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_decrypt' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_base64_encode' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_ctr_drbg_random' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_aes_free' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_ctr_drbg_free' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_free' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_update' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_init' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_aes_init' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_parse_key' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_hmac' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_setup' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_parse_public_key' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_encrypt' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_aes_setkey_dec' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_init' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_get_len' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_hmac_update' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_ctr_drbg_init' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_ctr_drbg_seed' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_x509_crt_parse_path' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_free' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_aes_crypt_cbc' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_rsa' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_x509_crt_parse_file' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_finish' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_hmac_starts' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_entropy_free' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_pk_parse_keyfile' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_info_from_type' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_rsa_rsassa_pkcs1_v15_sign' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_get_size' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_hmac_finish' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_rsa_rsassa_pkcs1_v15_verify' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_aes_setkey_enc' > /usr/bin/ld: > /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/libncbi-vdb.so: > undefined reference to `vdb_mbedtls_md_starts' > collect2: error: ld returned 1 exit status The full build log is available from: http://qa-logs.debian.net/2020/02/25/skesa_2.3.0-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
