Hi Andrius, Am Thu, May 05, 2022 at 04:14:16PM +0300 schrieb Andrius Merkys: > > Adding these is easy. Would you mind adding either this fna file (or > > some similar example) to the test suite enabling us to test that package > > properly in autopkgtest? > > Adding these surely are easy - thanks for doing so. Some maintainers > prefer keeping nonessential dependencies as Recommends or Suggests and > since this is my first encounter with busco I cannot say much about it.
I think in the field of bioinformatics there is no real point in beeing sparse with dependencies. I think a failure due to a missing program is a pretty good reason to add a Depends. > As for autopkgtest, busco has fna files under test_data/. Bit more > problematic is that busco needs some data from BUSCO database [1] to > calculate genome coverage. These could be downloaded and stored > somewhere under debian/ for autopkgtest purpose, but I cannot find the > licensing information. > > > (And feel free to do a team upload if you are in that mood.) > > Sure, I can upload if we decide that autopkgtest could wait. I'm a big fan of fixing bugs quickly - so feel free to upload. May be some wishlist bug that describes the problem of the autopkgtest keeps a record about this issue. Kind regards Andreas. > [1] https://busco-data.ezlab.org/v5/data/lineages/ > > Best, > Andrius > -- http://fam-tille.de