Your message dated Fri, 05 Oct 2012 09:02:58 +0000
with message-id <[email protected]>
and subject line Bug#688661: fixed in ncbi-blast+ 2.2.27-2
has caused the Debian Bug report #688661,
regarding ncbi-blast+: FTBFS on arm* or mips*: no NCBI_INT8_TYPE
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
688661: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=688661
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ncbi-blast+
Version: 2.2.27-1
Severity: serious
Tags: upstream patch
Justification: fails to build from source
Thanks for updating BLAST+ to the latest release! Alas, it turned out
to have a portability bug, for which I just committed a fix upstream;
could you please incorporate the patch?
http://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/c%2B%2B/include/corelib/ncbitype.h?view=log
ncbitype.h: switch NCBI_BIG_TYPE's baseline to Int8 from NCBI_INT8_TYPE
to fix build failures on Linux systems with ARM or MIPS processors,
which have inttypes.h and lack an extra-wide scalar type.
--- trunk/c++/include/corelib/ncbitype.h 2012/06/01 19:13:24 54673
+++ trunk/c++/include/corelib/ncbitype.h 2012/09/24 14:15:47 55773
@@ -150,7 +150,7 @@
/* BigScalar
*/
-#define NCBI_BIG_TYPE NCBI_INT8_TYPE
+#define NCBI_BIG_TYPE Int8
#define SIZEOF_NCBI_BIG 8
#if (SIZEOF_LONG_DOUBLE > SIZEOF_NCBI_BIG)
# undef NCBI_BIG_TYPE
--- End Message ---
--- Begin Message ---
Source: ncbi-blast+
Source-Version: 2.2.27-2
We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <[email protected]> (supplier of updated ncbi-blast+ package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Mon, 24 Sep 2012 09:28:29 +0200
Source: ncbi-blast+
Binary: ncbi-blast+ ncbi-blast+-legacy
Architecture: source amd64 all
Version: 2.2.27-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Olivier Sallou <[email protected]>
Description:
ncbi-blast+ - next generation suite of BLAST sequence search tools
ncbi-blast+-legacy - NCBI Blast legacy call script
Closes: 688661 688684
Changes:
ncbi-blast+ (2.2.27-2) unstable; urgency=low
.
* debian/patches/fix_arm_mips_build: Fix FTBS on ARM and MIPS
(Closes: #688661).
* debian/rules: rename seedtop to seedtop+ to avoid blast2 conflict
(Closes: #688684).
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