Your message dated Fri, 05 Oct 2012 14:48:01 +0000
with message-id <[email protected]>
and subject line Bug#688661: fixed in ncbi-blast+ 2.2.27-3
has caused the Debian Bug report #688661,
regarding ncbi-blast+: FTBFS on arm* or mips*: no NCBI_INT8_TYPE
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
688661: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=688661
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: ncbi-blast+
Version: 2.2.27-1
Severity: serious
Tags: upstream patch
Justification: fails to build from source
Thanks for updating BLAST+ to the latest release! Alas, it turned out
to have a portability bug, for which I just committed a fix upstream;
could you please incorporate the patch?
http://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/c%2B%2B/include/corelib/ncbitype.h?view=log
ncbitype.h: switch NCBI_BIG_TYPE's baseline to Int8 from NCBI_INT8_TYPE
to fix build failures on Linux systems with ARM or MIPS processors,
which have inttypes.h and lack an extra-wide scalar type.
--- trunk/c++/include/corelib/ncbitype.h 2012/06/01 19:13:24 54673
+++ trunk/c++/include/corelib/ncbitype.h 2012/09/24 14:15:47 55773
@@ -150,7 +150,7 @@
/* BigScalar
*/
-#define NCBI_BIG_TYPE NCBI_INT8_TYPE
+#define NCBI_BIG_TYPE Int8
#define SIZEOF_NCBI_BIG 8
#if (SIZEOF_LONG_DOUBLE > SIZEOF_NCBI_BIG)
# undef NCBI_BIG_TYPE
--- End Message ---
--- Begin Message ---
Source: ncbi-blast+
Source-Version: 2.2.27-3
We believe that the bug you reported is fixed in the latest version of
ncbi-blast+, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <[email protected]> (supplier of updated ncbi-blast+ package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 05 Oct 2012 11:03:03 +0200
Source: ncbi-blast+
Binary: ncbi-blast+ ncbi-blast+-legacy
Architecture: source amd64 all
Version: 2.2.27-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Olivier Sallou <[email protected]>
Description:
ncbi-blast+ - next generation suite of BLAST sequence search tools
ncbi-blast+-legacy - NCBI Blast legacy call script
Closes: 688661
Changes:
ncbi-blast+ (2.2.27-3) unstable; urgency=low
.
* debian/series: active patch fix_arm_mips_build (Closes: #688661).
Checksums-Sha1:
53419fa649ecaf3518b1d95cc358b652b6267a72 2316 ncbi-blast+_2.2.27-3.dsc
e29e8e6fd05cc4521c52871e7e932de98cd64507 22929
ncbi-blast+_2.2.27-3.debian.tar.gz
22009f0bb0e8d1a51722bccd608b37d25a5c2ae1 12016040
ncbi-blast+_2.2.27-3_amd64.deb
35665b1bf9fa3ffb4b4c34029f76e73bb62d97ca 7724
ncbi-blast+-legacy_2.2.27-3_all.deb
Checksums-Sha256:
5afb883fae2fc03bef8b43731fa614c88e0bf429d6ec8b30c07aa1b7c330015f 2316
ncbi-blast+_2.2.27-3.dsc
77adcca48d4a2a7b0ca88edf7d2d04657a0c26985ad4b4a06ba4b29ab684a294 22929
ncbi-blast+_2.2.27-3.debian.tar.gz
0cb347c57c6e70d9a239ffedda2a49ed1fdc5fb6e899f317dffd5a7a49d5e803 12016040
ncbi-blast+_2.2.27-3_amd64.deb
f6f85eb121cf3192b36cddc05949886a83425257923830b80610ef9792c690b4 7724
ncbi-blast+-legacy_2.2.27-3_all.deb
Files:
1138d3f096ceae95fce8f665c209377d 2316 science optional ncbi-blast+_2.2.27-3.dsc
9761c33f05aef865d776b727390fdd69 22929 science optional
ncbi-blast+_2.2.27-3.debian.tar.gz
a6e50b83474945f16b78fc1c05e8af1d 12016040 science optional
ncbi-blast+_2.2.27-3_amd64.deb
4fc3f2a9f7d0257e31e5ace245ca009a 7724 science optional
ncbi-blast+-legacy_2.2.27-3_all.deb
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.12 (GNU/Linux)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=9Gbw
-----END PGP SIGNATURE-----
--- End Message ---
