Control: tags -1 help
Hi,
this bug is fixed in Git. Unfortunately there is an issue with python3-libsbml
which prevents successful building:
________________________ ERROR collecting test session _________________________
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:440: in
_importconftest
return self._conftestpath2mod[conftestpath]
E KeyError:
local('/build/python-cobra-0.18.0/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py')
During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:446: in
_importconftest
mod = conftestpath.pyimport()
/usr/lib/python3/dist-packages/py/_path/local.py:701: in pyimport
__import__(modname)
cobra/__init__.py:40: in <module>
from cobra import io
cobra/io/__init__.py:8: in <module>
from cobra.io.sbml import read_sbml_model, write_sbml_model, \
cobra/io/sbml.py:41: in <module>
import libsbml
/usr/lib/python3/dist-packages/libsbml/libsbml.py:22: in <module>
import _libsbml
E ModuleNotFoundError: No module named '_libsbml'
During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/py/_path/common.py:383: in visit
for x in Visitor(fil, rec, ignore, bf, sort).gen(self):
/usr/lib/python3/dist-packages/py/_path/common.py:435: in gen
for p in self.gen(subdir):
/usr/lib/python3/dist-packages/py/_path/common.py:424: in gen
dirs = self.optsort([p for p in entries
/usr/lib/python3/dist-packages/py/_path/common.py:425: in <listcomp>
if p.check(dir=1) and (rec is None or rec(p))])
/usr/lib/python3/dist-packages/_pytest/main.py:667: in _recurse
ihook = self.gethookproxy(dirpath)
/usr/lib/python3/dist-packages/_pytest/main.py:482: in gethookproxy
my_conftestmodules = pm._getconftestmodules(fspath)
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:424: in
_getconftestmodules
mod = self._importconftest(conftestpath.realpath())
/usr/lib/python3/dist-packages/_pytest/config/__init__.py:463: in
_importconftest
raise ConftestImportFailure(conftestpath, sys.exc_info())
E _pytest.config.ConftestImportFailure:
(local('/build/python-cobra-0.18.0/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py'),
(<class 'ModuleNotFoundError'>, ModuleNotFoundError("No module named
'_libsbml'"), <traceback object at 0x7f69e9276a50>))
=============================== warnings summary ===============================
Any help is really welcome
Andreas.
--
http://fam-tille.de
