Control: tags -1 upstream Control: forwarded -1 Peter Cock <p.j.a.c...@googlemail.com>
Hi Peter, it seems the patch applied does not work for 32bit architectures. Kind regards Andreas. On Sat, May 16, 2020 at 02:25:20PM +0300, Adrian Bunk wrote: > Source: python-biopython > Version: 1.76+dfsg-2 > Severity: serious > Tags: ftbfs > > https://buildd.debian.org/status/package.php?p=python-biopython&suite=sid > > ... > ====================================================================== > FAIL: test_fasta_db_nucl (test_NCBI_BLAST_tools.BlastDB) > Test makeblastdb wrapper with nucleotide database. > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", > line 249, in test_fasta_db_nucl > self.assertTrue(os.path.isfile("GenBank/NC_005816.fna.nhd")) > AssertionError: False is not true > > ====================================================================== > FAIL: test_fasta_db_prot (test_NCBI_BLAST_tools.BlastDB) > Test makeblastdb wrapper with protein database. > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests/test_NCBI_BLAST_tools.py", > line 208, in test_fasta_db_prot > self.assertTrue(os.path.isfile("GenBank/NC_005816.faa.phd")) > AssertionError: False is not true > > ---------------------------------------------------------------------- > Ran 518 tests in 330.272 seconds > > FAILED (failures = 1) > Skipping any tests requiring internet access > Python version: 3.8.3 (default, May 14 2020, 11:03:12) > [GCC 9.3.0] > Operating system: posix linux > E: pybuild pybuild:352: test: plugin custom failed with: exit code=1: set -e; > \ > mkdir -p > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home; \ > mkdir -p > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc/examples; \ > cp -a Doc/Tutorial.tex > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ > cp -a Doc/Tutorial > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ > cp -a Doc/examples > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Doc; \ > cp -a Tests > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build; \ > cd > /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/Tests; \ > env DIALIGN2_DIR=/usr/share/dialign > EMBOSS_ROOT=/usr/lib/emboss > HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8/build/home python3.8 run_tests.py > --offline > dh_auto_test: error: pybuild --test -i python{version} -p 3.8 --test > --system=custom "--test-args=set -e; \\\ > mkdir -p {build_dir}/home; \\\ > mkdir -p {build_dir}/Doc/examples; \\\ > cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ > cp -a Doc/Tutorial {build_dir}/Doc; \\\ > cp -a Doc/examples {build_dir}/Doc; \\\ > cp -a Tests {build_dir}; \\\ > cd {build_dir}/Tests; \\\ > env DIALIGN2_DIR=/usr/share/dialign > EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py > --offline" returned exit code 13 > make[1]: *** [debian/rules:83: override_dh_auto_test] Error 25 > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de