Package: src:dssp Version: 4.5.6-1 Severity: serious Tags: ftbfs forky sid Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202511/ [ Note: There has been a recent upload for libcifpp, one of the build-depends, so I'm adding Maarten L. Hekkelman in X-debbugs-Cc ] About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:dssp, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] OTHER OTHER11 ? GLU A 118 ? GLU A 118 ? GLU A 118 GLU A 118 ? ? ? STRN STRN9 ? LEU A 119 ? ALA A 125 ? LEU A 119 ALA A 125 ? ? ? TURN_TY1_P TURN_TY1_P8 ? ASP A 126 ? ASP A 127 ? ASP A 126 ASP A 127 ? ? ? STRN STRN10 ? VAL A 128 ? ARG A 136 ? VAL A 128 ARG A 136 ? ? ? OTHER OTHER12 ? GLU A 137 ? GLU A 137 ? GLU A 137 GLU A 137 ? ? ? # Configuration error: The attempt to retrieve compound information for "PRO" failed. This information is searched for in a CCD file called components.cif or components.cif.gz which should be located in one of the following directories: "/<<PKGBUILDDIR>>/test/../libdssp/mmcif_pdbx/" "/var/cache/libcifpp" "/usr/share/libcifpp" (Note that you can add a directory to the search paths by setting the LIBCIFPP_DATA_DIR environmental variable) On Linux an optional cron script might have been installed that automatically updates components.cif and mmCIF dictionary files. This script only works when the file libcifpp.conf contains an uncommented line with the text: update=true If you do not have a working cron script, you can manually update the files in /var/cache/libcifpp using the following commands: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic curl -o /var/cache/libcifpp/mmcif_ma.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ma.dic No compound factory objects are created since none of the data sources is found. Unknown compound: PRO Unknown compound: ASN Unknown compound: PHE Unknown compound: SER Unknown compound: GLY Unknown compound: TRP Unknown compound: LYS Unknown compound: ILE Unknown compound: ARG Unknown compound: GLU Unknown compound: LEU Unknown compound: VAL Unknown compound: MET Unknown compound: ALA Unknown compound: GLN Unknown compound: ASP Unknown compound: THR Unknown compound: TYR Unknown compound: CYS Unknown compound: REA Unknown compound: HOH =============================================================================== test cases: 6 | 5 passed | 1 failed assertions: 1273 | 1272 passed | 1 failed 0% tests passed, 1 tests failed out of 1 Total Test time (real) = 0.64 sec The following tests FAILED: 1 - unit-test-dssp (Failed) Errors while running CTest make[1]: *** [Makefile:94: test] Error 8 make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j2 test ARGS\+=--verbose ARGS\+=-j2 returned exit code 2 make: *** [debian/rules:15: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
