Your message dated Wed, 26 Nov 2025 10:34:19 +0000
with message-id <[email protected]>
and subject line Bug#1121383: fixed in dssp 4.5.7-1
has caused the Debian Bug report #1121383,
regarding dssp: FTBFS: The following tests FAILED: 1 - unit-test-dssp (Failed)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1121383: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1121383
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:dssp
Version: 4.5.6-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202511/
[ Note: There has been a recent upload for libcifpp, one of the build-depends,
so I'm adding Maarten L. Hekkelman in X-debbugs-Cc ]
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:dssp, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
OTHER OTHER11 ? GLU A 118 ? GLU A 118 ? GLU A 118 GLU A 118 ? ?
?
STRN STRN9 ? LEU A 119 ? ALA A 125 ? LEU A 119 ALA A 125 ? ?
?
TURN_TY1_P TURN_TY1_P8 ? ASP A 126 ? ASP A 127 ? ASP A 126 ASP A 127 ? ?
?
STRN STRN10 ? VAL A 128 ? ARG A 136 ? VAL A 128 ARG A 136 ? ?
?
OTHER OTHER12 ? GLU A 137 ? GLU A 137 ? GLU A 137 GLU A 137 ? ?
?
#
Configuration error:
The attempt to retrieve compound information for "PRO" failed.
This information is searched for in a CCD file called components.cif or
components.cif.gz which should be located in one of the following directories:
"/<<PKGBUILDDIR>>/test/../libdssp/mmcif_pdbx/"
"/var/cache/libcifpp"
"/usr/share/libcifpp"
(Note that you can add a directory to the search paths by setting the
LIBCIFPP_DATA_DIR environmental variable)
On Linux an optional cron script might have been installed that automatically
updates
components.cif and mmCIF dictionary files. This script only works when the file
libcifpp.conf contains an uncommented line with the text:
update=true
If you do not have a working cron script, you can manually update the files
in /var/cache/libcifpp using the following commands:
curl -o /var/cache/libcifpp/components.cif
https://files.wwpdb.org/pub/pdb/data/monomers/components.cif
curl -o /var/cache/libcifpp/mmcif_pdbx.dic
https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic
curl -o /var/cache/libcifpp/mmcif_ma.dic
https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_ma.dic
No compound factory objects are created since none of the data sources is found.
Unknown compound: PRO
Unknown compound: ASN
Unknown compound: PHE
Unknown compound: SER
Unknown compound: GLY
Unknown compound: TRP
Unknown compound: LYS
Unknown compound: ILE
Unknown compound: ARG
Unknown compound: GLU
Unknown compound: LEU
Unknown compound: VAL
Unknown compound: MET
Unknown compound: ALA
Unknown compound: GLN
Unknown compound: ASP
Unknown compound: THR
Unknown compound: TYR
Unknown compound: CYS
Unknown compound: REA
Unknown compound: HOH
===============================================================================
test cases: 6 | 5 passed | 1 failed
assertions: 1273 | 1272 passed | 1 failed
0% tests passed, 1 tests failed out of 1
Total Test time (real) = 0.64 sec
The following tests FAILED:
1 - unit-test-dssp (Failed)
Errors while running CTest
make[1]: *** [Makefile:94: test] Error 8
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j2 test ARGS\+=--verbose
ARGS\+=-j2 returned exit code 2
make: *** [debian/rules:15: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: dssp
Source-Version: 4.5.7-1
Done: Maarten L. Hekkelman <[email protected]>
We believe that the bug you reported is fixed in the latest version of
dssp, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Maarten L. Hekkelman <[email protected]> (supplier of updated dssp package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 26 Nov 2025 10:56:41 +0100
Source: dssp
Architecture: source
Version: 4.5.7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Maarten L. Hekkelman <[email protected]>
Closes: 1121383
Changes:
dssp (4.5.7-1) unstable; urgency=medium
.
* New upstream version 4.5.7
* Closes: #1121383
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