Your message dated Mon, 16 Mar 2026 15:03:31 +0900
with message-id <[email protected]>
and subject line Re: [R-pkg-team] Bug#1123933: r-cran-glmmtmb: autopkgtest
regression with r-cran-reformulas 0.4.3-1
has caused the Debian Bug report #1123933,
regarding r-cran-glmmtmb: autopkgtest regression with r-cran-reformulas 0.4.3-1
to be marked as done.
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--
1123933: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1123933
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--- Begin Message ---
Source: r-cran-glmmtmb
Version: 1.1.10+dfsg-1
Severity: serious
Tags: forky sid
X-Debbugs-Cc: Dirk Eddelbuettel <[email protected]>
User: [email protected]
Usertags: regression
Hi Maintainer
r-cran-glmmtmb's autopkgtest fails when tested with r-cran-reformulas
0.4.3-1 [1]. I've copied what I hope is the relevant part of the log
below.
Regards
Graham
[1] https://ci.debian.net/packages/r/r-cran-glmmtmb/testing/amd64/
129s == Failed
======================================================================
129s -- 1. Error ('test-smooths.R:11:5'): basic smooth
------------------------------
129s <notSubsettableError/error/condition>
129s Error in `x[[2]]`: object of type 'symbol' is not subsettable
129s Backtrace:
129s x
129s 1. \-glmmTMB::glmmTMB(val ~ s(time), data = ndat, REML = TRUE,
start = list(theta = log(sd(ndat$val)))) at test-smooths.R:11:5
129s 2. \-glmmTMB:::mkTMBStruc(...)
129s 3. \-glmmTMB:::getXReTrms(...)
129s 4. \-base::Map(...)
129s 5. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
129s 6. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
129s 7. \-glmmTMB (local) termsfun(f)
129s 8. \-base::eval(substitute(~foo, list(foo = x[[2]])))
129s
129s -- 2. Error ('test-smooths.R:26:5'): smooth with no fixed-effect
components ----
129s <notSubsettableError/error/condition>
129s Error in `x[[2]]`: object of type 'symbol' is not subsettable
129s Backtrace:
129s x
129s 1. \-glmmTMB::simulate_new(...) at test-smooths.R:26:5
129s 2. \-glmmTMB::glmmTMB(...)
129s 3. \-glmmTMB:::mkTMBStruc(...)
129s 4. \-glmmTMB:::getXReTrms(...)
129s 5. \-base::Map(...)
129s 6. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
129s 7. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
129s 8. \-glmmTMB (local) termsfun(f)
129s 9. \-base::eval(substitute(~foo, list(foo = x[[2]])))
129s
129s -- 3. Error ('test-smooths.R:48:5'): smooth + diag() specials
------------------
129s <notSubsettableError/error/condition>
129s Error in `x[[2]]`: object of type 'symbol' is not subsettable
129s Backtrace:
129s x
129s 1. \-glmmTMB::simulate_new(...) at test-smooths.R:48:5
129s 2. \-glmmTMB::glmmTMB(...)
129s 3. \-glmmTMB:::mkTMBStruc(...)
129s 4. \-glmmTMB:::getXReTrms(...)
129s 5. \-base::Map(...)
129s 6. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
129s 7. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
129s 8. \-glmmTMB (local) termsfun(f)
129s 9. \-base::eval(substitute(~foo, list(foo = x[[2]])))
129s
129s -- 4. Error ('test-smooths.R:68:5'): multiple smooths
--------------------------
129s <notSubsettableError/error/condition>
129s Error in `x[[2]]`: object of type 'symbol' is not subsettable
129s Backtrace:
129s x
129s 1. \-glmmTMB::glmmTMB(y ~ s(x1) + s(x2), data = fake_data) at
test-smooths.R:68:5
129s 2. \-glmmTMB:::mkTMBStruc(...)
129s 3. \-glmmTMB:::getXReTrms(...)
129s 4. \-base::Map(...)
129s 5. \-base::mapply(FUN = f, ..., SIMPLIFY = FALSE)
129s 6. \-glmmTMB (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
129s 7. \-glmmTMB (local) termsfun(f)
129s 8. \-base::eval(substitute(~foo, list(foo = x[[2]])))
129s
129s == DONE
========================================================================
--- End Message ---
--- Begin Message ---
Version: 1.1.14+dfsg-1
Hi Graham and everybody,
the tests are passing now on Unstable since 2026-02-06 13:54:20 UTC at
least.
Have a nice day,
Charles
--
Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - [email protected]
Okinawa Institute of Science and Technology Graduate University
Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu
Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy
--- End Message ---
