Your message dated Mon, 16 Mar 2026 15:10:11 +0900
with message-id <[email protected]>
and subject line Re: r-cran-adephylo: FTBFS: Error: object 'loadRcppModules' is
not exported by 'namespace:Rcpp'
has caused the Debian Bug report #1126237,
regarding r-cran-adephylo: FTBFS: Error: object 'loadRcppModules' is not
exported by 'namespace:Rcpp'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1126237: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1126237
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:r-cran-adephylo
Version: 1.1-17-2
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202601/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:r-cran-adephylo, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary
dh binary --buildsystem R
dh_update_autotools_config -O--buildsystem=R
dh_autoreconf -O--buildsystem=R
dh_auto_configure -O--buildsystem=R
dh_auto_build -O--buildsystem=R
dh_auto_test -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=R
dh_prep -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-adephylo/ -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: adephylo Version: 1.1-17
I: Building using R version 4.5.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 26 Dec 2025 17:25:04 +0900
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library
R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library --clean .
--built-timestamp="'Fri, 26 Dec 2025 17:25:04 +0900'"
* installing *source* package âadephyloâ ...
** this is package âadephyloâ version â1.1-17â
** package âadephyloâ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: âgcc (Debian 15.2.0-12) 15.2.0â
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
adesub.c -o adesub.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
distPhylo.c -o distPhylo.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
init.c -o init.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
misc.c -o misc.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
phylog.c -o phylog.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2
-ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -c
sptips.c -o sptips.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o adephylo.so adesub.o distPhylo.o
init.o misc.o phylog.o sptips.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to
/<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library/00LOCK-r-cran-adephylo-1.1-17/00new/adephylo/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: object âloadRcppModulesâ is not exported by 'namespace:Rcpp'
Execution halted
ERROR: lazy loading failed for package âadephyloâ
* removing
â/<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library/adephyloâ
dh_auto_install: error: R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-adephylo/usr/lib/R/site-library --clean .
--built-timestamp="'Fri, 26 Dec 2025 17:25:04 +0900'" returned exit code 1
make: *** [debian/rules:4: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Version: 1.1-17-2
Fixed by the r-cran-rncl upload in January.
--
Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - [email protected]
Okinawa Institute of Science and Technology Graduate University
Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu
Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy
--- End Message ---
