Hi Andreas, and other Debian developers, I saw that CDK 2.3 is now in unstable! Great news! Many thanks for your time during the BioHackathon, and others for their effort to make this happen. Very much appreciated.
Egon On Tue, Nov 19, 2019 at 6:40 PM Andreas Tille <andr...@an3as.eu> wrote: > Hi, > > I've sat together with Egon Willighagen who is member of CDK upstream > team to update the cdk package[1]. So far the switch from ant to maven > seems to have basically succeeded. However, for some reason it does not > build modules in the correct sequence and thus we are running into: > > > [INFO] cdk ................................................ SUCCESS [ > 0.033 s] > [INFO] cdk-base ........................................... SUCCESS [ > 0.003 s] > [INFO] cdk-interfaces ..................................... SUCCESS [ > 1.894 s] > [INFO] cdk-core ........................................... SUCCESS [ > 2.407 s] > [INFO] cdk-standard ....................................... SUCCESS [ > 1.406 s] > [INFO] cdk-atomtype ....................................... SUCCESS [ > 0.209 s] > [INFO] cdk-valencycheck ................................... SUCCESS [ > 0.240 s] > [INFO] cdk-misc ........................................... SUCCESS [ > 0.007 s] > [INFO] cdk-diff ........................................... FAILURE [ > 0.025 s] > ... > [ERROR] Failed to execute goal on project cdk-diff: Could not resolve > dependencies for project org.openscience.cdk:cdk-diff:jar:2.3: Cannot > access ossrh (https://oss.sonatype.org/content/repositories/snapshots) in > offline mode and the artifact org.openscience.cdk:cdk-test:jar:tests:debian > has not been downloaded from it before. -> [Help 1] > [ERROR] > [ERROR] To see the full stack trace of the errors, re-run Maven with the > -e switch. > [ERROR] Re-run Maven using the -X switch to enable full debug logging. > [ERROR] > [ERROR] For more information about the errors and possible solutions, > please read the following articles: > [ERROR] [Help 1] > http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException > [ERROR] > [ERROR] After correcting the problems, you can resume the build with the > command > [ERROR] mvn <args> -rf :cdk-diff > > > Egon says cdk-test should be build before cdk-diff and we have no idea > why its not. According to Egon the travis build works nicely. Any idea > why this is different in a pbuilder chroot? > > Any help would be welcome > > Andreas. > > [1] https://salsa.debian.org/java-team/cdk > > -- > http://fam-tille.de > -- Hi, do you like citation networks? Already 51% of all citations are available <https://i4oc.org/> available for innovative new uses <https://twitter.com/hashtag/acs2ioc>. Join me in asking the American Chemical Society to join the Initiative for Open Citations too <https://www.change.org/p/asking-the-american-chemical-society-to-join-the-initiative-for-open-citations>. SpringerNature, the RSC and many others already did <https://i4oc.org/#publishers>. ----- E.L. Willighagen Department of Bioinformatics - BiGCaT Maastricht University (http://www.bigcat.unimaas.nl/) Homepage: http://egonw.github.com/ Blog: http://chem-bla-ics.blogspot.com/ PubList: https://www.zotero.org/egonw ORCID: 0000-0001-7542-0286 <http://orcid.org/0000-0001-7542-0286> ImpactStory: https://impactstory.org/u/egonwillighagen
