Author: tille Date: 2009-06-26 13:45:28 +0000 (Fri, 26 Jun 2009) New Revision: 3560
Modified: trunk/packages/biojava/trunk/debian/changelog trunk/packages/biojava/trunk/debian/control trunk/packages/biojava/trunk/debian/copyright trunk/packages/biojava/trunk/debian/rules Log: Make sure biojava installs nicely over previous versions; fixed clean target by setting JAVA_HOME properly; fixed some lintian issues Modified: trunk/packages/biojava/trunk/debian/changelog =================================================================== --- trunk/packages/biojava/trunk/debian/changelog 2009-06-26 13:19:58 UTC (rev 3559) +++ trunk/packages/biojava/trunk/debian/changelog 2009-06-26 13:45:28 UTC (rev 3560) @@ -1,3 +1,14 @@ +biojava-live (1.7.svn.20090419-3) unstable; urgency=low + + * debian/control: + - Conflicts: libbiojava1.6-java + - Replaces: libbiojava1.6-java + - Enhanced long description of libbiojava-java-doc + Closes: #522269 + * debian/rules: set JAVA_HOME to enable proper clean target + + -- Andreas Tille <[email protected]> Fri, 26 Jun 2009 10:01:10 +0200 + biojava-live (1.7.svn.20090419-2) unstable; urgency=low * Add Build Depends: ant-optional Modified: trunk/packages/biojava/trunk/debian/control =================================================================== --- trunk/packages/biojava/trunk/debian/control 2009-06-26 13:19:58 UTC (rev 3559) +++ trunk/packages/biojava/trunk/debian/control 2009-06-26 13:45:28 UTC (rev 3560) @@ -8,8 +8,9 @@ Build-Depends-Indep: libcommons-cli-java, libcommons-dbcp-java (>= 1.1), libhsqldb-java, libcommons-collections-java (>= 2.1), libcommons-pool-java (>= 1.1), libbytecode-java (>= 0.92.cvs.20070925), - openjdk-6-jdk|sun-java6-jdk|sun-java5-jdk|sun-j2sdk1.4|java2-compiler, junit4 -Build-Depends: debhelper, quilt, cdbs, ant, ant-optional + openjdk-6-jdk|sun-java6-jdk|sun-java5-jdk|sun-j2sdk1.4|java2-compiler, junit4, + ant-optional +Build-Depends: debhelper, quilt, cdbs, ant Standards-Version: 3.8.2 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biojava/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biojava/trunk/ @@ -19,6 +20,8 @@ Architecture: all Depends: ${shlibs:Depends},${misc:Depends}, libcommons-pool-java (>= 1.1), libcommons-collections-java (>= 2.1), libcommons-dbcp-java (>= 1.1), libhsqldb-java, libbytecode-java, openjdk-6-jre|sun-java6-jre|sun-java5-jre|java2-runtime Suggests: java-virtual-machine, libjgrapht-java, libbiojava-java, libbiojava-java-doc +Conflicts: libbiojava1.6-java +Replaces: libbiojava1.6-java Description: Java API to biological data and applications This package presents the Open Source Java API to biological databases and a series of mostly sequence-based algorithms. The APIs are not @@ -31,6 +34,8 @@ Package: libbiojava-java Architecture: all Depends: libbiojava1.7-java +Conflicts: libbiojava1.6-java +Replaces: libbiojava1.6-java Description: Java API to biological data and applications BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating @@ -49,8 +54,10 @@ A. Prlić, D. Huen, K. James, S. Foisy, A. Dräger, A. Yates, M. Heuer; M.J. Schreiber (2008) "BioJava: an Open-Source Framework for Bioinformatics" Bioinformatics 24(18):2096-2097. + . + This is a wrapper package which should enable smooth upgrades to new + versions. - Package: libbiojava-java-demos Architecture: all Recommends: libbiojava-java @@ -66,4 +73,5 @@ Recommends: konqueror|html-browser Suggests: libbiojava-java-demos, libbiojava-java Description: [Biology] Documentation for BioJava - JavaDoc generated HTML files describing the API. + This package contains the HTML documentation describing the API of BioJava + which was generated automatically by JavaDoc. Modified: trunk/packages/biojava/trunk/debian/copyright =================================================================== --- trunk/packages/biojava/trunk/debian/copyright 2009-06-26 13:19:58 UTC (rev 3559) +++ trunk/packages/biojava/trunk/debian/copyright 2009-06-26 13:45:28 UTC (rev 3560) @@ -87,8 +87,8 @@ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA -The Debian packaging is (C) 2007-2008, Steffen Moeller <[email protected]> and -is licensed under the GNU Lesser General Public License version 2.1 or higher, +The Debian packaging is Copyright 2007-2008, Steffen Moeller <[email protected]> +and is licensed under the GNU Lesser General Public License version 2.1 or higher, see `/usr/share/common-licenses/LGPL-2.1'. License: LGPL-2.1+ Modified: trunk/packages/biojava/trunk/debian/rules =================================================================== --- trunk/packages/biojava/trunk/debian/rules 2009-06-26 13:19:58 UTC (rev 3559) +++ trunk/packages/biojava/trunk/debian/rules 2009-06-26 13:45:28 UTC (rev 3560) @@ -11,6 +11,8 @@ # in this debian/rules file. include /usr/share/cdbs/1/rules/buildvars.mk +export JAVA_HOME := $(shell /usr/sbin/update-java-alternatives -l | head -1 | cut -d' ' -f 3) + # take the first two version numbers to prepare a symbolic link # to the real jar SOVERSION=$(shell dpkg-parsechangelog | grep ^Version | cut -f2 -d\ | dpkg-parsechangelog | grep ^Version | cut -f2 -d\ | cut -f1 -d- | cut -f1,2 -d. ) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
