Author: tille Date: 2010-06-04 21:55:53 +0000 (Fri, 04 Jun 2010) New Revision: 4870
Removed: trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian trunk/packages/R/r-cran-qtl/trunk/debian/changelog trunk/packages/R/r-cran-qtl/trunk/debian/control trunk/packages/R/r-cran-qtl/trunk/debian/rules trunk/packages/R/r-cran-qtl/trunk/debian/source/format Log: Commiting the version which was uploaded by Steffen M?\195?\182ller Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian 2010-06-04 21:53:11 UTC (rev 4869) +++ trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian 2010-06-04 21:55:53 UTC (rev 4870) @@ -1,16 +1,23 @@ -README.Debian for r-cran-qtl: -============================= +The debian package name was changed fom qtl on the CRAN archives to +r-cran-qtl. This best reflects the origin of the package obvious. The +qtl source are referred to as r/qtl on the upstream web pages +(http://www.biostat.jhsph.edu/~kbroman/qtl/). +Dirk Eddelbuettel <[email protected]> kindly sponsored the initial release +and performed many smaller changes to streamline the debianisation. I +very much thank him for this. + +The chromosomal linkage analyses for a longer time seemed neglected in +the bioinformatics community. If the distribution of this package in +Debian had some positive side effect in improving the communication +between researchers in bioinformatics and genetics, then we have +achieved something real good. + When using the package, please cite Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889-890 in your publications. -Notes on how this package can be tested. -──────────────────────────────────────── -This package can be tested by loading it into R with the command -‘library(qtl)’ in order to confirm its integrity. - -- Steffen Moeller <[email protected]> Wed, 10 Oct 2007 13:43:39 +0200 Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2010-06-04 21:53:11 UTC (rev 4869) +++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2010-06-04 21:55:53 UTC (rev 4870) @@ -1,22 +1,12 @@ -qtl (1.16-6-2) UNRELEASED; urgency=low - - * Fixed spelling of Debian Med (removed dash) - - -- Andreas Tille <[email protected]> Fri, 04 Jun 2010 14:12:49 +0200 - qtl (1.16-6-1) unstable; urgency=low * New upstream version - * Added myself to Uploaders - * Standards-Version: 3.8.4 (no changes needed) - * Debhelper 7 - * Moved from pkg-bioc to debian-med SVN repository - * Updated README.Debian - * Added upstream-metadata.yaml - * debian/{control,rules}: Depends: ${R:Depends} - * Source format 3.0 (quilt) + - Integration of MQM mapping of mapqtl + - Many smallish or larger improvements + * Updated standards-version + - Added debian/source/format indication - -- Andreas Tille <[email protected]> Fri, 04 Jun 2010 13:50:18 +0200 + -- Steffen Moeller <[email protected]> Fri, 04 Jun 2010 13:05:47 +0200 qtl (1.14-2-1) unstable; urgency=low Modified: trunk/packages/R/r-cran-qtl/trunk/debian/control =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/control 2010-06-04 21:53:11 UTC (rev 4869) +++ trunk/packages/R/r-cran-qtl/trunk/debian/control 2010-06-04 21:55:53 UTC (rev 4870) @@ -1,18 +1,17 @@ Source: qtl Section: gnu-r Priority: optional -Maintainer: Debian Med Packaging Team <[email protected]> -Uploaders: Steffen Moeller <[email protected]>, - Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.10.0~20091019) +Maintainer: Debian-Med Packaging Team <[email protected]> +Uploaders: Steffen Moeller <[email protected]> +Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.10.0~20091019) Standards-Version: 3.8.4 -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qtl/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qtl/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/pkg-bioc/trunk/packages/qtl/trunk/ Homepage: http://www.rqtl.org Package: r-cran-qtl Architecture: any -Depends: ${shlibs:Depends}, ${R:Depends} +Depends: ${shlibs:Depends}, r-base-core (>= 2.10.0~20091019) Description: GNU R package for genetic marker linkage analysis R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. It is implemented as an Modified: trunk/packages/R/r-cran-qtl/trunk/debian/rules =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/rules 2010-06-04 21:53:11 UTC (rev 4869) +++ trunk/packages/R/r-cran-qtl/trunk/debian/rules 2010-06-04 21:55:53 UTC (rev 4870) @@ -4,7 +4,3 @@ # Copyright 2003-2006 by Dirk Eddelbuettel <[email protected]> include /usr/share/R/debian/r-cran.mk - -install/$(package):: - # Require a number equal or superior than the R version the package was built with. - echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars Modified: trunk/packages/R/r-cran-qtl/trunk/debian/source/format =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/source/format 2010-06-04 21:53:11 UTC (rev 4869) +++ trunk/packages/R/r-cran-qtl/trunk/debian/source/format 2010-06-04 21:55:53 UTC (rev 4870) @@ -1 +1 @@ -3.0 (quilt) +1.0 Deleted: trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml 2010-06-04 21:53:11 UTC (rev 4869) +++ trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml 2010-06-04 21:55:53 UTC (rev 4870) @@ -1,9 +0,0 @@ -Homepage: http://www.rqtl.org -Name: R/qtl: A QTL mapping environment -Reference: - Author: K. W. Broman, H. Wu, S. Sen, G. A. Churchill - Title: R/qtl: QTL mapping in experimental crosses. - Journal: Bioinformatics - Number: 19 - Pages: 889-890 - Year: 2003 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
