Author: tille Date: 2010-11-24 13:20:17 +0000 (Wed, 24 Nov 2010) New Revision: 5482
Added: trunk/packages/clustalw/trunk/debian/source/ trunk/packages/clustalw/trunk/debian/source/format Removed: trunk/packages/clustalw/trunk/debian/patches/ Modified: trunk/packages/clustalw/trunk/debian/CHANGELOG.upstream trunk/packages/clustalw/trunk/debian/changelog trunk/packages/clustalw/trunk/debian/control trunk/packages/clustalw/trunk/debian/rules Log: New upstream version; adapted packaging to current standards in Debian Med Modified: trunk/packages/clustalw/trunk/debian/CHANGELOG.upstream =================================================================== --- trunk/packages/clustalw/trunk/debian/CHANGELOG.upstream 2010-11-24 12:52:08 UTC (rev 5481) +++ trunk/packages/clustalw/trunk/debian/CHANGELOG.upstream 2010-11-24 13:20:17 UTC (rev 5482) @@ -1,4 +1,32 @@ ---------------------------------------------------------------------- +Version 2.1 +---------------------------------------------------------------------- +* Fixed bug 196 "clustalx: user feedback about use of secondary structure + printed to console" - secondary structure is now used if specified + in Alignment -> Alignment Parameters -> Secondary Structure Parameters + UserParameters->getGui() should be used when ClustalW code needs to + know if a function has been called from ClustalX + +* Fixed bug 204 "Nexus alignment format contain invalid line" - the amino + acid alphabet line has been removed + +* Missing/corrupted file names in ClustalX status messages have been + fixed + +* Fixed bug 175 "msf/pileup files cannot be read if sequences names are + all numbers" - this happened if a line such as +528244 .......... .......... .......... .......... .......... + was present in the first block of the file + +* Fixed bug 192 "Alignment in Phylip Format broken for big Alignments" + +* Fixed bug 198 "Warning about divergent sequences gets printed to + console in ClustalX" + +* Fixed bug 151 "clustalx doesn't switch to profile alignment mode when + profile12 is given on cmdline" + +---------------------------------------------------------------------- Version 2.0.12 ---------------------------------------------------------------------- @@ -247,3 +275,4 @@ * Fixed bug 91 Clustalw2.0 now handles pseudo-FASTA/MoST format files. Strips out numbers and spaces. + Modified: trunk/packages/clustalw/trunk/debian/changelog =================================================================== --- trunk/packages/clustalw/trunk/debian/changelog 2010-11-24 12:52:08 UTC (rev 5481) +++ trunk/packages/clustalw/trunk/debian/changelog 2010-11-24 13:20:17 UTC (rev 5482) @@ -1,3 +1,14 @@ +clustalw (2.1-1) unstable; urgency=low + + * New upstream version + * Added myself to uploaders + * Standards-Version: 3.9.1 (no changes needed) + * debian/rules: added get-upstream-changelog target and used + it to obtain upstream changelog in debian/CHANGELOG.upstream + * debian/source/format: 3.0 (quilt) + + -- Andreas Tille <[email protected]> Wed, 24 Nov 2010 14:07:24 +0100 + clustalw (2.0.12-1) unstable; urgency=low * New upstream release fixing many bugs Modified: trunk/packages/clustalw/trunk/debian/control =================================================================== --- trunk/packages/clustalw/trunk/debian/control 2010-11-24 12:52:08 UTC (rev 5481) +++ trunk/packages/clustalw/trunk/debian/control 2010-11-24 13:20:17 UTC (rev 5482) @@ -3,9 +3,10 @@ Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> DM-Upload-Allowed: yes -Uploaders: Steffen Moeller <[email protected]>, Charles Plessy <[email protected]> +Uploaders: Steffen Moeller <[email protected]>, Charles Plessy <[email protected]>, + Andreas Tille <[email protected]> Build-Depends: debhelper (>= 7), cdbs, autotools-dev -Standards-Version: 3.8.3 +Standards-Version: 3.9.1 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/clustalw/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/clustalw/trunk/ XS-Autobuild: yes Modified: trunk/packages/clustalw/trunk/debian/rules =================================================================== --- trunk/packages/clustalw/trunk/debian/rules 2010-11-24 12:52:08 UTC (rev 5481) +++ trunk/packages/clustalw/trunk/debian/rules 2010-11-24 13:20:17 UTC (rev 5482) @@ -12,3 +12,8 @@ # That is a bit ugly and should be better investigated. rmdir $(CURDIR)/debian/clustalw/usr/share/aclocal/ + +get-upstream-changelog: + # Get upstream changelog + cd debian; wget -N --output-document=CHANGELOG.upstream http://www.clustal.org/download/current/CHANGELOG + Added: trunk/packages/clustalw/trunk/debian/source/format =================================================================== --- trunk/packages/clustalw/trunk/debian/source/format (rev 0) +++ trunk/packages/clustalw/trunk/debian/source/format 2010-11-24 13:20:17 UTC (rev 5482) @@ -0,0 +1 @@ +3.0 (quilt) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
