Author: tille Date: 2010-11-24 13:34:23 +0000 (Wed, 24 Nov 2010) New Revision: 5484
Modified: trunk/packages/clustalx/trunk/debian/CHANGELOG.upstream trunk/packages/clustalx/trunk/debian/changelog trunk/packages/clustalx/trunk/debian/rules Log: New upstream version Modified: trunk/packages/clustalx/trunk/debian/CHANGELOG.upstream =================================================================== --- trunk/packages/clustalx/trunk/debian/CHANGELOG.upstream 2010-11-24 13:21:50 UTC (rev 5483) +++ trunk/packages/clustalx/trunk/debian/CHANGELOG.upstream 2010-11-24 13:34:23 UTC (rev 5484) @@ -1,4 +1,32 @@ ---------------------------------------------------------------------- +Version 2.1 +---------------------------------------------------------------------- +* Fixed bug 196 "clustalx: user feedback about use of secondary structure + printed to console" - secondary structure is now used if specified + in Alignment -> Alignment Parameters -> Secondary Structure Parameters + UserParameters->getGui() should be used when ClustalW code needs to + know if a function has been called from ClustalX + +* Fixed bug 204 "Nexus alignment format contain invalid line" - the amino + acid alphabet line has been removed + +* Missing/corrupted file names in ClustalX status messages have been + fixed + +* Fixed bug 175 "msf/pileup files cannot be read if sequences names are + all numbers" - this happened if a line such as +528244 .......... .......... .......... .......... .......... + was present in the first block of the file + +* Fixed bug 192 "Alignment in Phylip Format broken for big Alignments" + +* Fixed bug 198 "Warning about divergent sequences gets printed to + console in ClustalX" + +* Fixed bug 151 "clustalx doesn't switch to profile alignment mode when + profile12 is given on cmdline" + +---------------------------------------------------------------------- Version 2.0.12 ---------------------------------------------------------------------- @@ -247,3 +275,4 @@ * Fixed bug 91 Clustalw2.0 now handles pseudo-FASTA/MoST format files. Strips out numbers and spaces. + Modified: trunk/packages/clustalx/trunk/debian/changelog =================================================================== --- trunk/packages/clustalx/trunk/debian/changelog 2010-11-24 13:21:50 UTC (rev 5483) +++ trunk/packages/clustalx/trunk/debian/changelog 2010-11-24 13:34:23 UTC (rev 5484) @@ -1,3 +1,11 @@ +clustalx (2.1-1) unstable; urgency=low + + * New upstream version + * debian/rules: added get-upstream-changelog target and used + it to obtain upstream changelog in debian/CHANGELOG.upstream + + -- Andreas Tille <[email protected]> Wed, 24 Nov 2010 14:24:10 +0100 + clustalx (2.0.12-3) unstable; urgency=low * debian/clustalx.desktop: Fixed typo Modified: trunk/packages/clustalx/trunk/debian/rules =================================================================== --- trunk/packages/clustalx/trunk/debian/rules 2010-11-24 13:21:50 UTC (rev 5483) +++ trunk/packages/clustalx/trunk/debian/rules 2010-11-24 13:34:23 UTC (rev 5484) @@ -26,4 +26,8 @@ override_dh_installchangelogs: dh_installchangelogs debian/CHANGELOG.upstream +get-upstream-changelog: + # Get upstream changelog + cd debian; wget -N --output-document=CHANGELOG.upstream http://www.clustal.org/download/current/CHANGELOG + .PHONY: build clean binary-arch binary install _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
