Author: plessy Date: 2010-12-21 17:59:20 +0000 (Tue, 21 Dec 2010) New Revision: 5610
Added: trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff Removed: trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.3-headers Modified: trunk/packages/probcons/trunk/debian/changelog trunk/packages/probcons/trunk/debian/patches/series Log: To build with GCC 4.5. Modified: trunk/packages/probcons/trunk/debian/changelog =================================================================== --- trunk/packages/probcons/trunk/debian/changelog 2010-12-21 07:18:46 UTC (rev 5609) +++ trunk/packages/probcons/trunk/debian/changelog 2010-12-21 17:59:20 UTC (rev 5610) @@ -1,3 +1,11 @@ +probcons (1.12-6) UNRELEASED; urgency=low + + * Renamed and updated the patch to build with GCC (debian/patches/series, + debian/patches/fix-gcc-4.3-headers, debian/patches/gcc-4.5.diff) + Closes: #607728 + + -- Charles Plessy <[email protected]> Wed, 22 Dec 2010 02:05:41 +0900 + probcons (1.12-5) unstable; urgency=low [ Charles Plessy ] Deleted: trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.3-headers =================================================================== --- trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.3-headers 2010-12-21 07:18:46 UTC (rev 5609) +++ trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.3-headers 2010-12-21 17:59:20 UTC (rev 5610) @@ -1,33 +0,0 @@ ---- a/CompareToRef.cc -+++ b/CompareToRef.cc -@@ -7,7 +7,7 @@ - - #include "SafeVector.h" - #include "MultiSequence.h" --#include <string> -+#include <string.h> - #include <sstream> - #include <iomanip> - #include <iostream> ---- a/Main.cc -+++ b/Main.cc -@@ -11,7 +11,7 @@ - #include "ProbabilisticModel.h" - #include "EvolutionaryTree.h" - #include "SparseMatrix.h" --#include <string> -+#include <string.h> - #include <sstream> - #include <iomanip> - #include <iostream> ---- a/ProjectPairwise.cc -+++ b/ProjectPairwise.cc -@@ -7,7 +7,7 @@ - - #include "SafeVector.h" - #include "MultiSequence.h" --#include <string> -+#include <string.h> - #include <sstream> - #include <iomanip> - #include <iostream> Added: trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff =================================================================== --- trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff (rev 0) +++ trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff 2010-12-21 17:59:20 UTC (rev 5610) @@ -0,0 +1,64 @@ +Description: To build ProbCons with gcc-4.5 by including additional headers. +Origin: http://bugs.debian.org/607728 +Forwarded: yes + +Index: probcons-1.12/ProbabilisticModel.h +=================================================================== +--- probcons-1.12.orig/ProbabilisticModel.h 2010-12-21 13:01:04.548229000 +0000 ++++ probcons-1.12/ProbabilisticModel.h 2010-12-21 13:01:04.868229000 +0000 +@@ -12,6 +12,7 @@ + #include <list> + #include <cmath> + #include <cstdio> ++#include <cstring> + #include "SafeVector.h" + #include "ScoreType.h" + #include "SparseMatrix.h" +Index: probcons-1.12/ProjectPairwise.cc +=================================================================== +--- probcons-1.12.orig/ProjectPairwise.cc 2010-12-21 13:01:04.858229000 +0000 ++++ probcons-1.12/ProjectPairwise.cc 2010-12-21 13:01:04.868229000 +0000 +@@ -16,6 +16,7 @@ + #include <limits> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + +Index: probcons-1.12/CompareToRef.cc +=================================================================== +--- probcons-1.12.orig/CompareToRef.cc 2010-12-21 13:04:39.418227395 +0000 ++++ probcons-1.12/CompareToRef.cc 2010-12-21 13:05:16.438228987 +0000 +@@ -16,6 +16,7 @@ + #include <limits> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + +Index: probcons-1.12/FixRef.cc +=================================================================== +--- probcons-1.12.orig/FixRef.cc 2010-12-21 13:04:39.398225710 +0000 ++++ probcons-1.12/FixRef.cc 2010-12-21 13:05:11.058229036 +0000 +@@ -17,6 +17,7 @@ + #include <algorithm> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + +Index: probcons-1.12/Main.cc +=================================================================== +--- probcons-1.12.orig/Main.cc 2010-12-21 13:04:39.438228258 +0000 ++++ probcons-1.12/Main.cc 2010-12-21 13:05:32.688228993 +0000 +@@ -21,6 +21,7 @@ + #include <climits> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + Modified: trunk/packages/probcons/trunk/debian/patches/series =================================================================== --- trunk/packages/probcons/trunk/debian/patches/series 2010-12-21 07:18:46 UTC (rev 5609) +++ trunk/packages/probcons/trunk/debian/patches/series 2010-12-21 17:59:20 UTC (rev 5610) @@ -1,3 +1,3 @@ 10_add-RNA-in-Makefile.diff 11-Rename-programs-in-Makefile.diff -fix-gcc-4.3-headers +gcc-4.5.diff _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
