Author: tille Date: 2010-12-21 21:17:36 +0000 (Tue, 21 Dec 2010) New Revision: 5611
Added: trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.5-headers Removed: trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff Modified: trunk/packages/probcons/trunk/debian/changelog trunk/packages/probcons/trunk/debian/patches/series Log: Uploaded to fix one important bug quickly (sorry for wasting Charles' work) Modified: trunk/packages/probcons/trunk/debian/changelog =================================================================== --- trunk/packages/probcons/trunk/debian/changelog 2010-12-21 17:59:20 UTC (rev 5610) +++ trunk/packages/probcons/trunk/debian/changelog 2010-12-21 21:17:36 UTC (rev 5611) @@ -1,10 +1,10 @@ -probcons (1.12-6) UNRELEASED; urgency=low +probcons (1.12-6) unstable; urgency=low - * Renamed and updated the patch to build with GCC (debian/patches/series, - debian/patches/fix-gcc-4.3-headers, debian/patches/gcc-4.5.diff) - Closes: #607728 + * Use proper C++ headers to fix gcc version 4.3 and higher + issues (thanks for the patch to Matthias Klose) + Closes: 607728 - -- Charles Plessy <[email protected]> Wed, 22 Dec 2010 02:05:41 +0900 + -- Andreas Tille <[email protected]> Tue, 21 Dec 2010 21:53:42 +0100 probcons (1.12-5) unstable; urgency=low Copied: trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.5-headers (from rev 5610, trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff) =================================================================== --- trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.5-headers (rev 0) +++ trunk/packages/probcons/trunk/debian/patches/fix-gcc-4.5-headers 2010-12-21 21:17:36 UTC (rev 5611) @@ -0,0 +1,53 @@ +Author: Matthias Klose <[email protected]> +Description: Fix compile issues with gcc version 4.3 and higher + +--- probcons.orig/ProbabilisticModel.h ++++ probcons/ProbabilisticModel.h +@@ -12,6 +12,7 @@ + #include <list> + #include <cmath> + #include <cstdio> ++#include <cstring> + #include "SafeVector.h" + #include "ScoreType.h" + #include "SparseMatrix.h" +--- probcons.orig/ProjectPairwise.cc ++++ probcons/ProjectPairwise.cc +@@ -16,6 +16,7 @@ + #include <limits> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + +--- probcons.orig/CompareToRef.cc ++++ probcons/CompareToRef.cc +@@ -16,6 +16,7 @@ + #include <limits> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + +--- probcons.orig/FixRef.cc ++++ probcons/FixRef.cc +@@ -17,6 +17,7 @@ + #include <algorithm> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + +--- probcons.orig/Main.cc ++++ probcons/Main.cc +@@ -21,6 +21,7 @@ + #include <climits> + #include <cstdio> + #include <cstdlib> ++#include <cstring> + #include <cerrno> + #include <iomanip> + Deleted: trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff =================================================================== --- trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff 2010-12-21 17:59:20 UTC (rev 5610) +++ trunk/packages/probcons/trunk/debian/patches/gcc-4.5.diff 2010-12-21 21:17:36 UTC (rev 5611) @@ -1,64 +0,0 @@ -Description: To build ProbCons with gcc-4.5 by including additional headers. -Origin: http://bugs.debian.org/607728 -Forwarded: yes - -Index: probcons-1.12/ProbabilisticModel.h -=================================================================== ---- probcons-1.12.orig/ProbabilisticModel.h 2010-12-21 13:01:04.548229000 +0000 -+++ probcons-1.12/ProbabilisticModel.h 2010-12-21 13:01:04.868229000 +0000 -@@ -12,6 +12,7 @@ - #include <list> - #include <cmath> - #include <cstdio> -+#include <cstring> - #include "SafeVector.h" - #include "ScoreType.h" - #include "SparseMatrix.h" -Index: probcons-1.12/ProjectPairwise.cc -=================================================================== ---- probcons-1.12.orig/ProjectPairwise.cc 2010-12-21 13:01:04.858229000 +0000 -+++ probcons-1.12/ProjectPairwise.cc 2010-12-21 13:01:04.868229000 +0000 -@@ -16,6 +16,7 @@ - #include <limits> - #include <cstdio> - #include <cstdlib> -+#include <cstring> - #include <cerrno> - #include <iomanip> - -Index: probcons-1.12/CompareToRef.cc -=================================================================== ---- probcons-1.12.orig/CompareToRef.cc 2010-12-21 13:04:39.418227395 +0000 -+++ probcons-1.12/CompareToRef.cc 2010-12-21 13:05:16.438228987 +0000 -@@ -16,6 +16,7 @@ - #include <limits> - #include <cstdio> - #include <cstdlib> -+#include <cstring> - #include <cerrno> - #include <iomanip> - -Index: probcons-1.12/FixRef.cc -=================================================================== ---- probcons-1.12.orig/FixRef.cc 2010-12-21 13:04:39.398225710 +0000 -+++ probcons-1.12/FixRef.cc 2010-12-21 13:05:11.058229036 +0000 -@@ -17,6 +17,7 @@ - #include <algorithm> - #include <cstdio> - #include <cstdlib> -+#include <cstring> - #include <cerrno> - #include <iomanip> - -Index: probcons-1.12/Main.cc -=================================================================== ---- probcons-1.12.orig/Main.cc 2010-12-21 13:04:39.438228258 +0000 -+++ probcons-1.12/Main.cc 2010-12-21 13:05:32.688228993 +0000 -@@ -21,6 +21,7 @@ - #include <climits> - #include <cstdio> - #include <cstdlib> -+#include <cstring> - #include <cerrno> - #include <iomanip> - Modified: trunk/packages/probcons/trunk/debian/patches/series =================================================================== --- trunk/packages/probcons/trunk/debian/patches/series 2010-12-21 17:59:20 UTC (rev 5610) +++ trunk/packages/probcons/trunk/debian/patches/series 2010-12-21 21:17:36 UTC (rev 5611) @@ -1,3 +1,3 @@ 10_add-RNA-in-Makefile.diff 11-Rename-programs-in-Makefile.diff -gcc-4.5.diff +fix-gcc-4.5-headers _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
