Author: tille Date: 2011-01-14 12:52:03 +0000 (Fri, 14 Jan 2011) New Revision: 5664
Added: trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.patch trunk/packages/dialign/trunk/debian/patches/30_local_doc.patch trunk/packages/dialign/trunk/debian/patches/series trunk/packages/dialign/trunk/debian/source/ trunk/packages/dialign/trunk/debian/source/format Removed: trunk/packages/dialign/trunk/debian/patches/00list trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.dpatch trunk/packages/dialign/trunk/debian/patches/30_local_doc.dpatch Modified: trunk/packages/dialign/trunk/debian/changelog trunk/packages/dialign/trunk/debian/compat trunk/packages/dialign/trunk/debian/control trunk/packages/dialign/trunk/debian/rules Log: Commit pending changes, general packaging polishing Modified: trunk/packages/dialign/trunk/debian/changelog =================================================================== --- trunk/packages/dialign/trunk/debian/changelog 2011-01-14 12:35:07 UTC (rev 5663) +++ trunk/packages/dialign/trunk/debian/changelog 2011-01-14 12:52:03 UTC (rev 5664) @@ -1,14 +1,24 @@ -dialign (2.2.1-4) UNRELEASED; urgency=low +dialign (2.2.1-4) unstable; urgency=low [ David Paleino ] * Removed myself from Uploaders [ Charles Plessy ] - * Documented informations in ‘debian/upstream-metadata.yaml’. + * Documented information in ‘debian/upstream-metadata.yaml’. * Removed mention of the bibliographic reference in ‘debian/control’. - -- David Paleino <[email protected]> Sat, 23 May 2009 14:42:57 +0200 + [ Andreas Tille ] + * debian/control: + - Standards-Version: 3.9.1 (no changes needed) + - Debhelper 7 + - s/dpatch/quilt/ + - spelling of Debian Med + * debian/patches: converted to quilt + * debian/source/format: 3.0 (quilt) + * debian/rules: s/dpatch/patchsys-quilt/ + -- Andreas Tille <[email protected]> Fri, 14 Jan 2011 13:28:33 +0100 + dialign (2.2.1-3) unstable; urgency=low * Changed the doc-base section according to the new policy. Modified: trunk/packages/dialign/trunk/debian/compat =================================================================== --- trunk/packages/dialign/trunk/debian/compat 2011-01-14 12:35:07 UTC (rev 5663) +++ trunk/packages/dialign/trunk/debian/compat 2011-01-14 12:52:03 UTC (rev 5664) @@ -1 +1 @@ -5 +7 Modified: trunk/packages/dialign/trunk/debian/control =================================================================== --- trunk/packages/dialign/trunk/debian/control 2011-01-14 12:35:07 UTC (rev 5663) +++ trunk/packages/dialign/trunk/debian/control 2011-01-14 12:52:03 UTC (rev 5664) @@ -5,8 +5,8 @@ DM-Upload-Allowed: yes Uploaders: Charles Plessy <[email protected]>, Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 5), cdbs, dpatch -Standards-Version: 3.7.3 +Build-Depends: debhelper (>= 7), cdbs, quilt +Standards-Version: 3.9.1 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/dialign/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dialign/trunk/ Homepage: http://dialign.gobics.de/ Deleted: trunk/packages/dialign/trunk/debian/patches/00list =================================================================== --- trunk/packages/dialign/trunk/debian/patches/00list 2011-01-14 12:35:07 UTC (rev 5663) +++ trunk/packages/dialign/trunk/debian/patches/00list 2011-01-14 12:52:03 UTC (rev 5664) @@ -1,2 +0,0 @@ -20_no_DIALIGN2_DIR.dpatch -30_local_doc.dpatch Deleted: trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.dpatch =================================================================== --- trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.dpatch 2011-01-14 12:35:07 UTC (rev 5663) +++ trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.dpatch 2011-01-14 12:52:03 UTC (rev 5664) @@ -1,38 +0,0 @@ -#! /bin/sh /usr/share/dpatch/dpatch-run -## 20_no_DIALIGN2_DIR.dpatch by Charles Plessy <[email protected]> -## This patch is hereby released in public domain. -## -## All lines beginning with `## DP:' are a description of the patch. -## DP: Gives a default value to par_file so that the environment variable -## DP: DIALIGN2_DIR is optional - -@DPATCH@ - ---- dialign_package_old/src/dialign.c 2005-02-22 01:32:55.000000000 +0900 -+++ dialign_package/src/dialign.c 2006-04-09 23:14:18.000000000 +0900 -@@ -296,10 +296,13 @@ - - if ((par_file = getenv(dialign_dir)) == NULL) - { -- printf("\n \n \n Please set the environmentvariable DIALIGN2_DIR \n"); -- printf(" as described in the README file \n"); -- exit(1); -- } -+ par_file = "/usr/share/dialign/" ; /* Default value for Debian, makes the environment variable optional */ -+ -+/* printf("\n \n \n Please set the environmentvariable DIALIGN2_DIR \n"); -+ * printf(" as described in the README file \n"); -+ * exit(1); -+ */ -+ } - - argnum = argc; - -@@ -523,6 +526,7 @@ - printf(" to a directory containing the files \n\n"); - printf(" BLOSUM \n tp400_dna\n tp400_prot \n tp400_trans \n\n" ); - printf(" These files should be contained in the DIALIGN package \n\n\n" ) ; -+ printf(" See /usr/share/doc/dialign/README.Debian for more details \n" ) ; - exit(1) ; - - Added: trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.patch =================================================================== --- trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.patch (rev 0) +++ trunk/packages/dialign/trunk/debian/patches/20_no_DIALIGN2_DIR.patch 2011-01-14 12:52:03 UTC (rev 5664) @@ -0,0 +1,33 @@ +Author: Charles Plessy <[email protected]> +License: public domain. +Description: Gives a default value to par_file so that the environment variable + DIALIGN2_DIR is optional + +--- dialign-2.2.1.orig/src/dialign.c ++++ dialign-2.2.1/src/dialign.c +@@ -296,10 +296,13 @@ + + if ((par_file = getenv(dialign_dir)) == NULL) + { +- printf("\n \n \n Please set the environmentvariable DIALIGN2_DIR \n"); +- printf(" as described in the README file \n"); +- exit(1); +- } ++ par_file = "/usr/share/dialign/" ; /* Default value for Debian, makes the environment variable optional */ ++ ++/* printf("\n \n \n Please set the environmentvariable DIALIGN2_DIR \n"); ++ * printf(" as described in the README file \n"); ++ * exit(1); ++ */ ++ } + + argnum = argc; + +@@ -523,6 +526,7 @@ + printf(" to a directory containing the files \n\n"); + printf(" BLOSUM \n tp400_dna\n tp400_prot \n tp400_trans \n\n" ); + printf(" These files should be contained in the DIALIGN package \n\n\n" ) ; ++ printf(" See /usr/share/doc/dialign/README.Debian for more details \n" ) ; + exit(1) ; + + Deleted: trunk/packages/dialign/trunk/debian/patches/30_local_doc.dpatch =================================================================== --- trunk/packages/dialign/trunk/debian/patches/30_local_doc.dpatch 2011-01-14 12:35:07 UTC (rev 5663) +++ trunk/packages/dialign/trunk/debian/patches/30_local_doc.dpatch 2011-01-14 12:52:03 UTC (rev 5664) @@ -1,21 +0,0 @@ -#! /bin/sh /usr/share/dpatch/dpatch-run -## 30_local_doc.dpatch by Charles Plessy <[email protected]> -## This patch is hereby released in the public domain. -## -## All lines beginning with `## DP:' are a description of the patch. -## DP: Mentions the man page and /usr/share/doc/dialign when it is invoked -## DP: without arguments - -@DPATCH@ - ---- dialign_package_old/src/dialign.c 2006-04-16 21:34:22.000000000 +0900 -+++ dialign_package/src/dialign.c 2006-04-16 21:41:00.000000000 +0900 -@@ -320,7 +320,7 @@ - printf(" -lgs long genomic sequences: Both nucleotide and peptide\n"); - printf(" similarities calculated \n\n"); - printf(" Many more options are available, please consult the \n"); -- printf(" DIALIGN USER_GUIDE that should come with the DIALIGN package.\n"); -+ printf(" DIALIGN USER_GUIDE in /usr/share/doc/dialign/, or the manpage.\n"); - printf(" For more information on DIALIGN, please visit the DIALIGN\n"); - printf(" home page at BiBiServ (Bielefeld Bioinformatic Server): \n\n") ; - printf(" http://bibiserv.techfak.uni-bielefeld.de/dialign/ \n\n"); Added: trunk/packages/dialign/trunk/debian/patches/30_local_doc.patch =================================================================== --- trunk/packages/dialign/trunk/debian/patches/30_local_doc.patch (rev 0) +++ trunk/packages/dialign/trunk/debian/patches/30_local_doc.patch 2011-01-14 12:52:03 UTC (rev 5664) @@ -0,0 +1,16 @@ +Author: Charles Plessy <[email protected]> +License: public domain. +Description: Mentions the man page and /usr/share/doc/dialign when it is invoked + without arguments + +--- dialign-2.2.1.orig/src/dialign.c ++++ dialign-2.2.1/src/dialign.c +@@ -320,7 +320,7 @@ + printf(" -lgs long genomic sequences: Both nucleotide and peptide\n"); + printf(" similarities calculated \n\n"); + printf(" Many more options are available, please consult the \n"); +- printf(" DIALIGN USER_GUIDE that should come with the DIALIGN package.\n"); ++ printf(" DIALIGN USER_GUIDE in /usr/share/doc/dialign/, or the manpage.\n"); + printf(" For more information on DIALIGN, please visit the DIALIGN\n"); + printf(" home page at BiBiServ (Bielefeld Bioinformatic Server): \n\n") ; + printf(" http://bibiserv.techfak.uni-bielefeld.de/dialign/ \n\n"); Added: trunk/packages/dialign/trunk/debian/patches/series =================================================================== --- trunk/packages/dialign/trunk/debian/patches/series (rev 0) +++ trunk/packages/dialign/trunk/debian/patches/series 2011-01-14 12:52:03 UTC (rev 5664) @@ -0,0 +1,2 @@ +20_no_DIALIGN2_DIR.patch +30_local_doc.patch Modified: trunk/packages/dialign/trunk/debian/rules =================================================================== --- trunk/packages/dialign/trunk/debian/rules 2011-01-14 12:35:07 UTC (rev 5663) +++ trunk/packages/dialign/trunk/debian/rules 2011-01-14 12:52:03 UTC (rev 5664) @@ -1,7 +1,7 @@ #!/usr/bin/make -f include /usr/share/cdbs/1/rules/debhelper.mk -include /usr/share/cdbs/1/rules/dpatch.mk +include /usr/share/cdbs/1/rules/patchsys-quilt.mk include /usr/share/cdbs/1/class/makefile.mk DEB_MAKE_BUILD_TARGET = -C src Added: trunk/packages/dialign/trunk/debian/source/format =================================================================== --- trunk/packages/dialign/trunk/debian/source/format (rev 0) +++ trunk/packages/dialign/trunk/debian/source/format 2011-01-14 12:52:03 UTC (rev 5664) @@ -0,0 +1 @@ +3.0 (quilt) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
