Author: tille Date: 2011-01-31 19:52:50 +0000 (Mon, 31 Jan 2011) New Revision: 5839
Added: trunk/packages/vienna-rna/trunk/debian/patches/do_not_configure_g2-0.70.patch trunk/packages/vienna-rna/trunk/debian/vienna-rna.dirs trunk/packages/vienna-rna/trunk/debian/vienna-rna.docs trunk/packages/vienna-rna/trunk/debian/vienna-rna.info trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides trunk/packages/vienna-rna/trunk/debian/vienna-rna.manpages Removed: trunk/packages/vienna-rna/trunk/debian/dirs trunk/packages/vienna-rna/trunk/debian/docs trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1 Modified: trunk/packages/vienna-rna/trunk/debian/control trunk/packages/vienna-rna/trunk/debian/patches/series trunk/packages/vienna-rna/trunk/debian/rules trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.docs trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.install trunk/packages/vienna-rna/trunk/debian/vienna-rna.install Log: Fixed Build-Depends; avoid configuration of unused libg2; added different doc formats; fixed clean target to not remove files which exist in orig.tar.gz; configure --with-cluster, lintian overrides Modified: trunk/packages/vienna-rna/trunk/debian/control =================================================================== --- trunk/packages/vienna-rna/trunk/debian/control 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/control 2011-01-31 19:52:50 UTC (rev 5839) @@ -4,8 +4,8 @@ Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Uploaders: Alex Mestiashvili <a...@biotec.tu-dresden.de> DM-Upload-Allowed: yes -Build-Depends: debhelper (>= 7), autotools-dev, quilt (>= 0.47), tcsh | csh | c-shel, libg2-dev -Suggests: readseq +Build-Depends: debhelper (>= 7.1), autotools-dev, quilt (>= 0.47), tcsh | csh | c-shel, + libg2-dev, libgd2-xpm-dev, libx11-dev Standards-Version: 3.9.1 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/vienna-rna/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/vienna-rna/trunk/ @@ -16,6 +16,7 @@ Architecture: any Section: science Depends: ${shlibs:Depends}, ${perl:Depends}, ${misc:Depends} +Recommends: readseq (>= 1-9) Description: RNA sequence analysis The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary @@ -45,3 +46,4 @@ structures. It is developed and maintained by the group of Ivo Hofacker in Vienna. . + This package contains the documentation for vienna-rna. Deleted: trunk/packages/vienna-rna/trunk/debian/dirs =================================================================== --- trunk/packages/vienna-rna/trunk/debian/dirs 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/dirs 2011-01-31 19:52:50 UTC (rev 5839) @@ -1,2 +0,0 @@ -usr/bin -usr/sbin Deleted: trunk/packages/vienna-rna/trunk/debian/docs =================================================================== --- trunk/packages/vienna-rna/trunk/debian/docs 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/docs 2011-01-31 19:52:50 UTC (rev 5839) @@ -1,2 +0,0 @@ -NEWS -README Deleted: trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1 =================================================================== --- trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1 2011-01-31 19:52:50 UTC (rev 5839) @@ -1,966 +0,0 @@ -Description: Upstream changes introduced in version 1.8.4-1 - This patch has been created by dpkg-source during the package build. - Here's the last changelog entry, hopefully it gives details on why - those changes were made: - . - vienna-rna (1.8.4-1) unstable; urgency=low - . - * Initial release (Closes: #451193) - . - The person named in the Author field signed this changelog entry. -Author: Alex Mestiashvili <a...@biotec.tu-dresden.de> -Bug-Debian: http://bugs.debian.org/451193 - ---- -The information above should follow the Patch Tagging Guidelines, please -checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here -are templates for supplementary fields that you might want to add: - -Origin: <vendor|upstream|other>, <url of original patch> -Bug: <url in upstream bugtracker> -Bug-Debian: http://bugs.debian.org/<bugnumber> -Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber> -Forwarded: <no|not-needed|url proving that it has been forwarded> -Reviewed-By: <name and email of someone who approved the patch> -Last-Update: <YYYY-MM-DD> - ---- /dev/null -+++ vienna-rna-1.8.4/Perl/Makefile.perl.old -@@ -0,0 +1,937 @@ -+# This Makefile is for the RNA extension to perl. -+# -+# It was generated automatically by MakeMaker version -+# 6.55_02 (Revision: 65502) from the contents of -+# Makefile.PL. Don't edit this file, edit Makefile.PL instead. -+# -+# ANY CHANGES MADE HERE WILL BE LOST! -+# -+# MakeMaker ARGV: () -+# -+ -+# MakeMaker Parameters: -+ -+# AUTHOR => q[Ivo Hofacker <i...@tbi.univie.ac.at>] -+# BUILD_REQUIRES => { } -+# INSTALLDIRS => q[vendor] -+# LIBS => [q[-lm]] -+# MAKEFILE => q[Makefile.perl] -+# MYEXTLIB => q[../lib/libRNA.a] -+# NAME => q[RNA] -+# OBJECT => q[RNA_wrap.o] -+# PM => { RNA.pm=>q[$(INST_LIBDIR)/RNA.pm] } -+# PREREQ_PM => { } -+# VERSION => q[0.2] -+ -+# --- MakeMaker post_initialize section: -+ -+ -+# --- MakeMaker const_config section: -+ -+# These definitions are from config.sh (via /usr/lib/perl/5.10/Config.pm). -+# They may have been overridden via Makefile.PL or on the command line. -+AR = ar -+CC = cc -+CCCDLFLAGS = -fPIC -+CCDLFLAGS = -Wl,-E -+DLEXT = so -+DLSRC = dl_dlopen.xs -+EXE_EXT = -+FULL_AR = /usr/bin/ar -+LD = cc -+LDDLFLAGS = -shared -O2 -g -L/usr/local/lib -fstack-protector -+LDFLAGS = -fstack-protector -L/usr/local/lib -+LIBC = /lib/libc-2.11.2.so -+LIB_EXT = .a -+OBJ_EXT = .o -+OSNAME = linux -+OSVERS = 2.6.32.27-dsa-ia32 -+RANLIB = : -+SITELIBEXP = /usr/local/share/perl/5.10.1 -+SITEARCHEXP = /usr/local/lib/perl/5.10.1 -+SO = so -+VENDORARCHEXP = /usr/lib/perl5 -+VENDORLIBEXP = /usr/share/perl5 -+ -+ -+# --- MakeMaker constants section: -+AR_STATIC_ARGS = cr -+DIRFILESEP = / -+DFSEP = $(DIRFILESEP) -+NAME = RNA -+NAME_SYM = RNA -+VERSION = 0.2 -+VERSION_MACRO = VERSION -+VERSION_SYM = 0_2 -+DEFINE_VERSION = -D$(VERSION_MACRO)=\"$(VERSION)\" -+XS_VERSION = 0.2 -+XS_VERSION_MACRO = XS_VERSION -+XS_DEFINE_VERSION = -D$(XS_VERSION_MACRO)=\"$(XS_VERSION)\" -+INST_ARCHLIB = blib/arch -+INST_SCRIPT = blib/script -+INST_BIN = blib/bin -+INST_LIB = blib/lib -+INST_MAN1DIR = blib/man1 -+INST_MAN3DIR = blib/man3 -+MAN1EXT = 1p -+MAN3EXT = 3pm -+INSTALLDIRS = vendor -+DESTDIR = -+PREFIX = /usr -+PERLPREFIX = $(PREFIX) -+SITEPREFIX = $(PREFIX)/local -+VENDORPREFIX = $(PREFIX) -+INSTALLPRIVLIB = $(PERLPREFIX)/share/perl/5.10 -+DESTINSTALLPRIVLIB = $(DESTDIR)$(INSTALLPRIVLIB) -+INSTALLSITELIB = $(SITEPREFIX)/share/perl/5.10.1 -+DESTINSTALLSITELIB = $(DESTDIR)$(INSTALLSITELIB) -+INSTALLVENDORLIB = $(VENDORPREFIX)/share/perl5 -+DESTINSTALLVENDORLIB = $(DESTDIR)$(INSTALLVENDORLIB) -+INSTALLARCHLIB = $(PERLPREFIX)/lib/perl/5.10 -+DESTINSTALLARCHLIB = $(DESTDIR)$(INSTALLARCHLIB) -+INSTALLSITEARCH = $(SITEPREFIX)/lib/perl/5.10.1 -+DESTINSTALLSITEARCH = $(DESTDIR)$(INSTALLSITEARCH) -+INSTALLVENDORARCH = $(VENDORPREFIX)/lib/perl5 -+DESTINSTALLVENDORARCH = $(DESTDIR)$(INSTALLVENDORARCH) -+INSTALLBIN = $(PERLPREFIX)/bin -+DESTINSTALLBIN = $(DESTDIR)$(INSTALLBIN) -+INSTALLSITEBIN = $(SITEPREFIX)/bin -+DESTINSTALLSITEBIN = $(DESTDIR)$(INSTALLSITEBIN) -+INSTALLVENDORBIN = $(VENDORPREFIX)/bin -+DESTINSTALLVENDORBIN = $(DESTDIR)$(INSTALLVENDORBIN) -+INSTALLSCRIPT = $(PERLPREFIX)/bin -+DESTINSTALLSCRIPT = $(DESTDIR)$(INSTALLSCRIPT) -+INSTALLSITESCRIPT = $(SITEPREFIX)/bin -+DESTINSTALLSITESCRIPT = $(DESTDIR)$(INSTALLSITESCRIPT) -+INSTALLVENDORSCRIPT = $(VENDORPREFIX)/bin -+DESTINSTALLVENDORSCRIPT = $(DESTDIR)$(INSTALLVENDORSCRIPT) -+INSTALLMAN1DIR = $(PERLPREFIX)/share/man/man1 -+DESTINSTALLMAN1DIR = $(DESTDIR)$(INSTALLMAN1DIR) -+INSTALLSITEMAN1DIR = $(SITEPREFIX)/man/man1 -+DESTINSTALLSITEMAN1DIR = $(DESTDIR)$(INSTALLSITEMAN1DIR) -+INSTALLVENDORMAN1DIR = $(VENDORPREFIX)/share/man/man1 -+DESTINSTALLVENDORMAN1DIR = $(DESTDIR)$(INSTALLVENDORMAN1DIR) -+INSTALLMAN3DIR = $(PERLPREFIX)/share/man/man3 -+DESTINSTALLMAN3DIR = $(DESTDIR)$(INSTALLMAN3DIR) -+INSTALLSITEMAN3DIR = $(SITEPREFIX)/man/man3 -+DESTINSTALLSITEMAN3DIR = $(DESTDIR)$(INSTALLSITEMAN3DIR) -+INSTALLVENDORMAN3DIR = $(VENDORPREFIX)/share/man/man3 -+DESTINSTALLVENDORMAN3DIR = $(DESTDIR)$(INSTALLVENDORMAN3DIR) -+PERL_LIB = /usr/share/perl/5.10 -+PERL_ARCHLIB = /usr/lib/perl/5.10 -+LIBPERL_A = libperl.a -+MYEXTLIB = ../lib/libRNA.a -+FIRST_MAKEFILE = Makefile.perl -+MAKEFILE_OLD = Makefile.perl.old -+MAKE_APERL_FILE = Makefile.perl.aperl -+PERLMAINCC = $(CC) -+PERL_INC = /usr/lib/perl/5.10/CORE -+PERL = /usr/bin/perl -+FULLPERL = /usr/bin/perl -+ABSPERL = $(PERL) -+PERLRUN = $(PERL) -+FULLPERLRUN = $(FULLPERL) -+ABSPERLRUN = $(ABSPERL) -+PERLRUNINST = $(PERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)" -+FULLPERLRUNINST = $(FULLPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)" -+ABSPERLRUNINST = $(ABSPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)" -+PERL_CORE = 0 -+PERM_DIR = 755 -+PERM_RW = 644 -+PERM_RWX = 755 -+ -+MAKEMAKER = /usr/share/perl/5.10/ExtUtils/MakeMaker.pm -+MM_VERSION = 6.55_02 -+MM_REVISION = 65502 -+ -+# FULLEXT = Pathname for extension directory (eg Foo/Bar/Oracle). -+# BASEEXT = Basename part of FULLEXT. May be just equal FULLEXT. (eg Oracle) -+# PARENT_NAME = NAME without BASEEXT and no trailing :: (eg Foo::Bar) -+# DLBASE = Basename part of dynamic library. 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/dev/null 2>&1 -+MKPATH = $(ABSPERLRUN) -MExtUtils::Command -e 'mkpath' -- -+EQUALIZE_TIMESTAMP = $(ABSPERLRUN) -MExtUtils::Command -e 'eqtime' -- -+FALSE = false -+TRUE = true -+ECHO = echo -+ECHO_N = echo -n -+UNINST = 0 -+VERBINST = 0 -+MOD_INSTALL = $(ABSPERLRUN) -MExtUtils::Install -e 'install([ from_to => {@ARGV}, verbose => '\''$(VERBINST)'\'', uninstall_shadows => '\''$(UNINST)'\'', dir_mode => '\''$(PERM_DIR)'\'' ]);' -- -+DOC_INSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'perllocal_install' -- -+UNINSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'uninstall' -- -+WARN_IF_OLD_PACKLIST = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'warn_if_old_packlist' -- -+MACROSTART = -+MACROEND = -+USEMAKEFILE = -f -+FIXIN = $(ABSPERLRUN) -MExtUtils::MY -e 'MY->fixin(shift)' -- -+ -+ -+# --- MakeMaker makemakerdflt section: -+makemakerdflt : all -+ $(NOECHO) $(NOOP) -+ -+ -+# --- MakeMaker dist section: -+TAR = tar -+TARFLAGS = cvf -+ZIP = zip -+ZIPFLAGS = -r -+COMPRESS = gzip --best 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Added: trunk/packages/vienna-rna/trunk/debian/patches/do_not_configure_g2-0.70.patch =================================================================== --- trunk/packages/vienna-rna/trunk/debian/patches/do_not_configure_g2-0.70.patch (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/patches/do_not_configure_g2-0.70.patch 2011-01-31 19:52:50 UTC (rev 5839) @@ -0,0 +1,45 @@ +Author: Andreas Tille <ti...@debian.org> +Date: 2011-01-31 +Description: The g2 library is just packaged for Debian and because we link + against this there is no need to even configure in this directory. + +--- ViennaRNA-1.8.4.orig/RNAforester/configure ++++ ViennaRNA-1.8.4/RNAforester/configure +@@ -748,7 +748,7 @@ + CC + CFLAGS + CXXCPP' +-ac_subdirs_all='g2-0.70' ++#ac_subdirs_all='g2-0.70' + + # Initialize some variables set by options. + ac_init_help= +@@ -4193,7 +4193,7 @@ + + + save_CPPFLAGS=$CPPFLAGS +-CPPFLAGS="-Ig2-0.70/src/ ${CPPFLAGS}" ++CPPFLAGS="${CPPFLAGS}" + + + { $as_echo "$as_me:$LINENO: checking for main in -lgd" >&5 +@@ -5310,8 +5310,8 @@ + fi + + +-CPPFLAGS="$save_CPPFLAGS -I../g2-0.70/include/ " +-LDFLAGS="-L../g2-0.70 ${LDFLAGS}" ++CPPFLAGS="$save_CPPFLAGS" ++LDFLAGS="${LDFLAGS}" + + if ${HAVE_LIBG2}; then + LIBS="-lg2 ${LIBS}" +@@ -5325,7 +5325,7 @@ + + + +-subdirs="$subdirs g2-0.70" ++subdirs="$subdirs" + + ac_config_files="$ac_config_files Makefile src/Makefile man/Makefile" + Modified: trunk/packages/vienna-rna/trunk/debian/patches/series =================================================================== --- trunk/packages/vienna-rna/trunk/debian/patches/series 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/patches/series 2011-01-31 19:52:50 UTC (rev 5839) @@ -5,3 +5,4 @@ fix_perl_modules_path.patch missing_x11.patch fix_missing_header.patch +do_not_configure_g2-0.70.patch Modified: trunk/packages/vienna-rna/trunk/debian/rules =================================================================== --- trunk/packages/vienna-rna/trunk/debian/rules 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/rules 2011-01-31 19:52:50 UTC (rev 5839) @@ -9,19 +9,39 @@ %: dh $@ -override_dh_auto_clean: +override_dh_auto_configure: + dh_auto_configure -- --with-cluster + +override_dh_auto_clean: +### <begin-just-remove> + ## (at) Removing packages from build directory which are inside the tarball is + ## wrong. Either remove it straight in the tarball or just leave them + ## untouched. Rationale: After 'make -f debian/rules clean` the build + ## directory should be *identical* to the tarball and there should not some + ## files missing. # rm -f build-arch-stamp build-indep-stamp # libg2-dev is standalone package - rm -rf RNAforester/g2-0.70 + # rm -rf RNAforester/g2-0.70 # readseq is standalone package - rm -rf Readseq + # rm -rf Readseq ### (at) hmmmm, these files are in the upstream tarball and removing them doese not seem to be a good idea # rm -f config.sub config.guess +### <end-just-remove> + echo "Do not run dh_auto_clean because it forces removal of man pages" - dh_clean --exclude ./Readseq/ureadseq.c.orig --exclude ./Readseq/readseq.c.orig --exclude ./Readseq/ureadseq.h.orig +override_dh_clean: + # upstream seems to have forgotten a make distclean and the manpages remained - so we try hard to keep them alive + mkdir -p man_tmp; mv man/*.1 man_tmp || true + # do not try to clean up where nothing was done + [ ! -f Makefile ] || $(MAKE) distclean + dh_clean --exclude=Readseq --exclude=RNAforester/g2-0.70/autom4te.cache + # Reinstall manpages where they were before + mv man_tmp/* man/ || true; rmdir man_tmp + # Clean up in Perl directory + cd Perl; [ ! -f Makefile ] || $(MAKE) distclean; rm -f *.old *.ps test.coord test.par override_dh_auto_install: + # rename perl scripts to remove the *.pl extension ls Utils/*.pl |while read line ; do cp $(CURDIR)/$$line $(CURDIR)/debian/vienna-rna/usr/bin/`echo $$line |awk -F "/" '{print $$2}'|tr -d '\.pl'` ; done - rm $(CURDIR)/debian/vienna-rna/usr/share/info/dir - + cd man; $(MAKE) pdf; $(MAKE) html Modified: trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.docs =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.docs 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.docs 2011-01-31 19:52:50 UTC (rev 5839) @@ -1,2 +1,2 @@ -#DOCS# +man/*.pdf Modified: trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.install =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.install 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna-doc.install 2011-01-31 19:52:50 UTC (rev 5839) @@ -1,2 +1,2 @@ -#DOCS# -Utils/Fold /usr/share/doc/vienna-rna/examples +man/RNAlib.html usr/share/doc/vienna-rna/html +Utils/Fold usr/share/doc/vienna-rna/examples Added: trunk/packages/vienna-rna/trunk/debian/vienna-rna.dirs =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna.dirs (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.dirs 2011-01-31 19:52:50 UTC (rev 5839) @@ -0,0 +1 @@ +usr/bin Added: trunk/packages/vienna-rna/trunk/debian/vienna-rna.docs =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna.docs (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.docs 2011-01-31 19:52:50 UTC (rev 5839) @@ -0,0 +1,2 @@ +NEWS +README Added: trunk/packages/vienna-rna/trunk/debian/vienna-rna.info =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna.info (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.info 2011-01-31 19:52:50 UTC (rev 5839) @@ -0,0 +1 @@ +man/*.info Modified: trunk/packages/vienna-rna/trunk/debian/vienna-rna.install =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna.install 2011-01-31 00:25:54 UTC (rev 5838) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.install 2011-01-31 19:52:50 UTC (rev 5839) @@ -1,33 +1,33 @@ -RNAforester/src/RNAforester /usr/bin -Kinfold/Kinfold /usr/bin -Progs/RNAeval /usr/bin -Progs/RNAfold /usr/bin -Progs/RNAheat /usr/bin -Progs/RNApaln /usr/bin -Progs/RNAplot /usr/bin -Progs/RNAdistance /usr/bin -Progs/RNAup /usr/bin -Progs/RNAplfold /usr/bin -Progs/RNAsubopt /usr/bin -Progs/RNAalifold /usr/bin -Progs/RNAaliduplex /usr/bin -Progs/RNAinverse /usr/bin -Progs/RNALfold /usr/bin -Progs/RNApdist /usr/bin -Progs/RNAcofold /usr/bin -Progs/RNAduplex /usr/bin -#Utils/Fold /usr/bin moved to examples -Utils/b2ct /usr/bin -Utils/popt /usr/bin -#Utils/ct2b /usr/bin -#Utils/b2mt /usr/bin -#Utils/coloraln /usr/bin -#Utils/rotate_ss /usr/bin -#Utils/colorrna /usr/bin -#Utils/dpzoom /usr/bin -#Utils/cmount /usr/bin -#Utils/mountain /usr/bin -#Utils/refold /usr/bin -#Utils/relplot /usr/bin -RNAforester/src/RNAforester /usr/bin -./Kinfold/Kinfold /usr/bin +Cluster/AnalyseDists usr/bin +Cluster/AnalyseSeqs usr/bin +Kinfold/Kinfold usr/bin +Progs/RNAaliduplex usr/bin +Progs/RNAalifold usr/bin +Progs/RNAcofold usr/bin +Progs/RNAdistance usr/bin +Progs/RNAduplex usr/bin +Progs/RNAeval usr/bin +Progs/RNAfold usr/bin +Progs/RNAheat usr/bin +Progs/RNAinverse usr/bin +Progs/RNALfold usr/bin +Progs/RNApaln usr/bin +Progs/RNApdist usr/bin +Progs/RNAplfold usr/bin +Progs/RNAplot usr/bin +Progs/RNAsubopt usr/bin +Progs/RNAup usr/bin +RNAforester/src/RNAforester usr/bin +Utils/b2ct usr/bin +Utils/popt usr/bin +#Utils/b2mt usr/bin +#Utils/cmount usr/bin +#Utils/coloraln usr/bin +#Utils/colorrna usr/bin +#Utils/ct2b usr/bin +#Utils/dpzoom usr/bin +#Utils/Fold usr/bin # moved to examples +#Utils/mountain usr/bin +#Utils/refold usr/bin +#Utils/relplot usr/bin +#Utils/rotate_ss usr/bin Added: trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides 2011-01-31 19:52:50 UTC (rev 5839) @@ -0,0 +1,4 @@ +# Upstream has left these files in the original tarball and there was no other +# reason to repack the tarball +vienna-rna source: configure-generated-file-in-source RNAforester/g2-0.70/config.log +vienna-rna source: configure-generated-file-in-source RNAforester/g2-0.70/config.status Added: trunk/packages/vienna-rna/trunk/debian/vienna-rna.manpages =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna.manpages (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.manpages 2011-01-31 19:52:50 UTC (rev 5839) @@ -0,0 +1 @@ +man/*.1 _______________________________________________ debian-med-commit mailing list debian-med-commit@lists.alioth.debian.org http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
