Author: tille Date: 2011-02-07 21:27:52 +0000 (Mon, 07 Feb 2011) New Revision: 5924
Added: trunk/packages/figtree/trunk/debian/figtree.1 trunk/packages/figtree/trunk/debian/figtree.manpages Modified: trunk/packages/figtree/trunk/debian/control trunk/packages/figtree/trunk/debian/get-orig-source trunk/packages/figtree/trunk/debian/patches/series Log: figtree.1 (not finished); kick any line with quaqua in a patch which seems to be sufficient to enable leaving out this Mac-only library. Modified: trunk/packages/figtree/trunk/debian/control =================================================================== --- trunk/packages/figtree/trunk/debian/control 2011-02-07 19:15:12 UTC (rev 5923) +++ trunk/packages/figtree/trunk/debian/control 2011-02-07 21:27:52 UTC (rev 5924) @@ -4,7 +4,8 @@ Maintainer: Debian Med Packaging Team <[email protected]> DM-Upload-Allowed: yes Uploaders: Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 7.1), openjdk-6-jdk, ant, quilt (>= 0.47) +Build-Depends: debhelper (>= 7.1), openjdk-6-jdk, ant, quilt (>= 0.47), + libfreehep-export-java Standards-Version: 3.9.1 Homepage: http://tree.bio.ed.ac.uk/software/figtree/ Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/figtree/trunk Added: trunk/packages/figtree/trunk/debian/figtree.1 =================================================================== --- trunk/packages/figtree/trunk/debian/figtree.1 (rev 0) +++ trunk/packages/figtree/trunk/debian/figtree.1 2011-02-07 21:27:52 UTC (rev 5924) @@ -0,0 +1,91 @@ +.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.38.4. +.TH FIGTREE "1" "February 2011" "figtree " "User Commands" +.SH NAME +figtree \- graphical phylogenetic tree viewer +.SH DESCRIPTION +Figtree is a (phylogenetic) tree figure drawing tool. +It is designed as a graphical viewer of phylogenetic trees and as +a program for producing publication-ready figures. In particular it is +designed to display summarized and annotated trees produced by BEAST. +.SH AUTHOR +Andrew Rambaut +.P +Institute of Evolutionary Biology +.P +University of Edinburgh +.P [email protected] +.P +http://tree.bio.ed.ac.uk/ +.IP +Uses the Java Evolutionary Biology Library (JEBL) +.IP +http://jebl.sourceforge.net/ +.IP +Thanks to Alexei Drummond, Joseph Heled, Philippe Lemey, +.IP +Tulio de Oliveira, Beth Shapiro & Marc Suchard +.IP +Usage: figtree [\-graphic <PDF|SVG|SWF|PS|EMF|GIF>] [\-width <i>] [\-height <i>] [\-help] [<tree\-file\-name>] [<graphic\-file\-name>] +.HP +\fB\-graphic\fR produce a graphic with the given format +.HP +\fB\-width\fR the width of the graphic in pixels +.HP +\fB\-height\fR the height of the graphic in pixels +.HP +\fB\-help\fR option to print this message +.IP +Example: figtree test.tree +Example: figtree \fB\-graphic\fR PDF test.tree test.pdf +Example: figtree \fB\-graphic\fR GIF \fB\-width\fR 320 \fB\-height\fR 320 test.tree test.gif +.PP +Unrecognized argument: \fB\-\-version\fR +.IP +FigTree v1.3.1, 2006\-2009 +.IP +Tree Figure Drawing Tool +.IP +Andrew Rambaut +.IP +Institute of Evolutionary Biology +.IP +University of Edinburgh +.IP [email protected] +.IP +http://tree.bio.ed.ac.uk/ +.IP +Uses the Java Evolutionary Biology Library (JEBL) +.IP +http://jebl.sourceforge.net/ +.IP +Thanks to Alexei Drummond, Joseph Heled, Philippe Lemey, +.IP +Tulio de Oliveira, Beth Shapiro & Marc Suchard +.IP +Usage: figtree [\-graphic <PDF|SVG|SWF|PS|EMF|GIF>] [\-width <i>] [\-height <i>] [\-help] [<tree\-file\-name>] [<graphic\-file\-name>] +.HP +\fB\-graphic\fR produce a graphic with the given format +.HP +\fB\-width\fR the width of the graphic in pixels +.HP +\fB\-height\fR the height of the graphic in pixels +.HP +\fB\-help\fR option to print this message +.IP +Example: figtree test.tree +Example: figtree \fB\-graphic\fR PDF test.tree test.pdf +Example: figtree \fB\-graphic\fR GIF \fB\-width\fR 320 \fB\-height\fR 320 test.tree test.gif +.SH "SEE ALSO" +The full documentation for +.B figtree +is maintained as a Texinfo manual. If the +.B info +and +.B figtree +programs are properly installed at your site, the command +.IP +.B info figtree +.PP +should give you access to the complete manual. Added: trunk/packages/figtree/trunk/debian/figtree.manpages =================================================================== --- trunk/packages/figtree/trunk/debian/figtree.manpages (rev 0) +++ trunk/packages/figtree/trunk/debian/figtree.manpages 2011-02-07 21:27:52 UTC (rev 5924) @@ -0,0 +1 @@ +debian/*.1 Modified: trunk/packages/figtree/trunk/debian/get-orig-source =================================================================== --- trunk/packages/figtree/trunk/debian/get-orig-source 2011-02-07 19:15:12 UTC (rev 5923) +++ trunk/packages/figtree/trunk/debian/get-orig-source 2011-02-07 21:27:52 UTC (rev 5924) @@ -37,15 +37,16 @@ rm -rf release/Mac release/Windows # remove jars which are provided as binaries but are not directly needed to build FigTree -for jar in lib/jwt/commons-fileupload-1.2.1.jar \ - lib/jwt/commons-io-1.4.jar \ - lib/libquaqua.jnilib \ - lib/jdom.jar \ - lib/swing-layout.jar \ - lib/quaqua-filechooser-only.jar \ - lib/quaqua-colorchooser-only.jar \ +for jar in jwt/commons-fileupload-1.2.1.jar \ + jwt/commons-io-1.4.jar \ + libquaqua.jnilib \ + jdom.jar \ + swing-layout.jar \ + quaqua-filechooser-only.jar \ + quaqua-colorchooser-only.jar \ + quaqua.jar \ ; do - rm -f $jar + rm -f lib/$jar done cd .. Modified: trunk/packages/figtree/trunk/debian/patches/series =================================================================== --- trunk/packages/figtree/trunk/debian/patches/series 2011-02-07 19:15:12 UTC (rev 5923) +++ trunk/packages/figtree/trunk/debian/patches/series 2011-02-07 21:27:52 UTC (rev 5924) @@ -1 +1,2 @@ build_figtree_gui_only.patch +ignore_quaqua.patch _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
