Author: tille Date: 2011-02-12 12:59:42 +0000 (Sat, 12 Feb 2011) New Revision: 5958
Modified: trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 trunk/packages/clonalframe/trunk/debian/copyright Log: Fix cut-n-pastos Modified: trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 =================================================================== --- trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 2011-02-11 23:25:09 UTC (rev 5957) +++ trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 2011-02-12 12:59:42 UTC (rev 5958) @@ -1,11 +1,13 @@ -.TH ClonalFrame "1" "February 2011" "This is ClonalFrame version 1.2" "User Commands" +.TH ClonalFrame "1" "1.2" "February 2011" .SH NAME -ClonalFrame \- manual page for This is ClonalFrame version 1.2 -.SH USAGE +ClonalFrame \- inference of bacterial microevolution using multilocus sequence data +.SH SYNOPSIS ClonalFrame [OPTIONS] inputfile outputfile .SH DESCRIPTION -This is ClonalFrame version 1.2 -.IP +ClonalFrame identifies the clonal relationships between the members of +a sample, while also estimating the chromosomal position of homologous +recombination events that have disrupted the clonal inheritance. + Options: .TP \fB\-x\fR NUM @@ -75,15 +77,8 @@ \fB\-L\fR Clean\-up the alignment before running ClonalFrame \fB\-l\fR Minimum distance between two reference sites (default is 50) \fB\-v\fR Verbose mode -.SH "SEE ALSO" -The full documentation for -.B This -is maintained as a Texinfo manual. If the -.B info -and -.B This -programs are properly installed at your site, the command -.IP -.B info This +.SH AUTHOR +\fBClonalFrame\fP was written by Xavier Didelot. .PP -should give you access to the complete manual. +This manual page was written by Andreas Tille <[email protected]>, +for the Debian project (but may be used by others). Modified: trunk/packages/clonalframe/trunk/debian/copyright =================================================================== --- trunk/packages/clonalframe/trunk/debian/copyright 2011-02-11 23:25:09 UTC (rev 5957) +++ trunk/packages/clonalframe/trunk/debian/copyright 2011-02-12 12:59:42 UTC (rev 5958) @@ -1,63 +1,29 @@ Format: http://dep.debian.net/deps/dep5/ -Upstream-Name: Bowtie -Upstream-Contact: Ben Langmead <[email protected]> -Source: http://sourceforge.net/projects/bowtie-bio/files/bowtie/ +Upstream-Name: ClonalFrame +Upstream-Contact: Xavier Didelot <[email protected]> +Source: http://www.xavierdidelot.xtreemhost.com/clonalframe.htm Files: * -Copyright: © 2009-2010 Ben Langmead, C. Trapnell, M. Pop, Steven L. Salzberg -License: - This program is free software; you can redistribute it and/or modify it - under the terms of the "Artistic License" which comes with Debian. +Copyright: © 2009-2010 Xavier Didelot <[email protected]> +License: GPL-2+ + ClonalFrame is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. - THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED - WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES - OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE. - - On Debian systems, the complete text of the Artistic License - can be found in "/usr/share/common-licenses/Artistic". + Velvet is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. -Files: SeqAn-1.1 -Upstream Authors: - Andreas Döring <[email protected]> - David Weese <[email protected]> - Tobias Rausch <[email protected]> - Stephan Aiche <[email protected]> - Anne-Katrin Emde <[email protected]> - Carsten Kemena <[email protected]> - Konrad Ludwig Moritz Rudolph <[email protected]> - Marcel H. Schulz. <[email protected]> -Copyright: - If not otherwise stated Copyright (C) 2007-2009 the Seqan authors. -License: - This library is free software; you can redistribute it and/or - modify it under the terms of the GNU Lesser General Public - License as published by the Free Software Foundation; either - version 3 of the License, or (at your option) any later version. + You should have received a copy of the GNU General Public License + along with Velvet; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA - This library is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU - Lesser General Public License for more details. +On Debian systems, the complete text of the GNU General Public +License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. - On Debian systems, you can find the LGPL license in: - /usr/share/common-licenses/LGPL - -File: SeqAn-1.1/seqan/index/index_sa_lss.h -Copyright: - Copyright 1999 N. Jesper Larsson <[email protected]> - Copyright 2007 David Weese. -License: - This software may be used freely for any purpose. However, when - distributed, the original source must be clearly stated, and, when - the source code is distributed, the copyright notice must be retained - and any alterations in the code must be clearly marked. No warranty - is given regarding the quality of this software. - - Files: debian/* -Copyright: © 2010 Files: * -Copyright: © 2011 Steffen Moeller <[email protected]>, - Yask Gupta <[email protected]> - © 2011 Andreas Tille <[email protected]> +Copyright: © 2011 Andreas Tille <[email protected]> License: PD The packaging work is in the public domain unless stated otherwise. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
