Author: tille Date: 2011-02-12 18:51:49 +0000 (Sat, 12 Feb 2011) New Revision: 5965
Modified: trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 Log: Further formatting of manpage Modified: trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 =================================================================== --- trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 2011-02-12 18:49:21 UTC (rev 5964) +++ trunk/packages/clonalframe/trunk/debian/ClonalFrame.1 2011-02-12 18:51:49 UTC (rev 5965) @@ -61,31 +61,44 @@ \fB\-t\fR NUM Indicate which initial tree to use: 0 for a null tree, 1 for a uniformly chosen coalescent tree and 2 for UPGMA tree (default) .TP -\fB\-w\fR FILE Use Newick file for initial tree +\fB\-w\fR FILE +Use Newick file for initial tree .TP -\fB\-a\fR NUM Sets the first parameter of the beta prior distribution of nu +\fB\-a\fR NUM +Sets the first parameter of the beta prior distribution of nu .TP -\fB\-b\fR NUM Sets the second parameter of the beta prior distribution of nu +\fB\-b\fR NUM +Sets the second parameter of the beta prior distribution of nu .TP -\fB\-U\fR Use uniform priors for rho, theta and delta +\fB\-U\fR +Use uniform priors for rho, theta and delta .TP -\fB\-B\fR Run in BURST mode +\fB\-B\fR +Run in BURST mode .TP -\fB\-C\fR Run in UPGMA mode with a site\-by\-site boostrap procedure +\fB\-C\fR +Run in UPGMA mode with a site\-by\-site boostrap procedure .TP -\fB\-c\fR Run in UPGMA mode with a fragment\-by\-fragment boostrap procedure +\fB\-c\fR +Run in UPGMA mode with a fragment\-by\-fragment boostrap procedure .TP -\fB\-S\fR NUM Sets the seed for the random number generator to NUM +\fB\-S\fR NUM +Sets the seed for the random number generator to NUM .TP -\fB\-E\fR NUM Sets the rate of exponential growth (default is 0) +\fB\-E\fR NUM +Sets the rate of exponential growth (default is 0) .TP -\fB\-I\fR Ignores first block in the alignment +\fB\-I\fR +Ignores first block in the alignment .TP -\fB\-L\fR Clean\-up the alignment before running ClonalFrame +\fB\-L\fR +Clean\-up the alignment before running ClonalFrame .TP -\fB\-l\fR Minimum distance between two reference sites (default is 50) +\fB\-l\fR +Minimum distance between two reference sites (default is 50) .TP -\fB\-v\fR Verbose mode +\fB\-v\fR +Verbose mode .SH AUTHOR \fBClonalFrame\fP was written by Xavier Didelot. .PP _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
