Author: tille Date: 2011-02-28 18:32:09 +0000 (Mon, 28 Feb 2011) New Revision: 6121
Added: trunk/packages/denoiser/trunk/debian/denoiser trunk/packages/denoiser/trunk/debian/pyversions Modified: trunk/packages/denoiser/trunk/debian/control trunk/packages/denoiser/trunk/debian/install Log: Add wrapper script, deems to depend from python-cogent which moves the package to contrib :-( Modified: trunk/packages/denoiser/trunk/debian/control =================================================================== --- trunk/packages/denoiser/trunk/debian/control 2011-02-28 17:19:52 UTC (rev 6120) +++ trunk/packages/denoiser/trunk/debian/control 2011-02-28 18:32:09 UTC (rev 6121) @@ -1,11 +1,11 @@ Source: denoiser -Section: science +Section: contrib/science Priority: extra Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Sri Girish Srinivasa Murthy <[email protected]>, Steffen Moeller <[email protected]>, Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 7.1), quilt (>= 0.47), python, ghc6 +Build-Depends: debhelper (>= 7.1), quilt (>= 0.47), python-support, python, ghc6 Standards-Version: 3.9.1 Homepage: http://www.microbio.me/denoiser/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/denoiser/trunk/?rev=0&sc=0 @@ -13,7 +13,7 @@ Package: denoiser Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends} +Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-cogent Description: Rapid denoising of pyrosequencing amplicon data To denoise pyrosequencing amplicon data, the package exploits the rank-abundance distribution. PyroNoise uses an expectation maximization Added: trunk/packages/denoiser/trunk/debian/denoiser =================================================================== --- trunk/packages/denoiser/trunk/debian/denoiser (rev 0) +++ trunk/packages/denoiser/trunk/debian/denoiser 2011-02-28 18:32:09 UTC (rev 6121) @@ -0,0 +1,9 @@ +#!/bin/bash + +# for debugging this script +# set -x + +OPTIONS=$@ + +export PYTHONPATH="${PYTHONPATH:+$PYTHONPATH:}/usr/share/denoiser/" +python -m Denoiser.denoiser ${OPTIONS} Modified: trunk/packages/denoiser/trunk/debian/install =================================================================== --- trunk/packages/denoiser/trunk/debian/install 2011-02-28 17:19:52 UTC (rev 6120) +++ trunk/packages/denoiser/trunk/debian/install 2011-02-28 18:32:09 UTC (rev 6121) @@ -1,3 +1,4 @@ FlowgramAlignment/FlowgramAli_4frame usr/lib/denoiser/bin Data usr/share/denoiser Denoiser usr/share/denoiser +debian/denoiser usr/bin Added: trunk/packages/denoiser/trunk/debian/pyversions =================================================================== --- trunk/packages/denoiser/trunk/debian/pyversions (rev 0) +++ trunk/packages/denoiser/trunk/debian/pyversions 2011-02-28 18:32:09 UTC (rev 6121) @@ -0,0 +1 @@ +2.4- _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
