Author: tille Date: 2011-04-28 12:52:03 +0000 (Thu, 28 Apr 2011) New Revision: 6699
Added: trunk/packages/mgltools/opengltk/tags/1.5.4.cvs.20100912-2/ trunk/packages/raxml/ trunk/packages/raxml/trunk/ trunk/packages/raxml/trunk/debian/ trunk/packages/raxml/trunk/debian/README.Debian trunk/packages/raxml/trunk/debian/changelog trunk/packages/raxml/trunk/debian/compat trunk/packages/raxml/trunk/debian/control trunk/packages/raxml/trunk/debian/copyright trunk/packages/raxml/trunk/debian/dirs trunk/packages/raxml/trunk/debian/install trunk/packages/raxml/trunk/debian/rules trunk/packages/raxml/trunk/debian/source/ trunk/packages/raxml/trunk/debian/source/format trunk/packages/raxml/trunk/debian/watch Log: Inject RAxML packaging (which was hanging around on my HD for a long time :-() Added: trunk/packages/raxml/trunk/debian/README.Debian =================================================================== --- trunk/packages/raxml/trunk/debian/README.Debian (rev 0) +++ trunk/packages/raxml/trunk/debian/README.Debian 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1,14 @@ +RAxML for Debian +---------------- + +This version of RAxML comes without a documentation. The homepage + http://wwwkramer.in.tum.de/exelixis/software.html +contains several useful hints like + +For the most basic RAxML commands see the old v704 manual + http://icwww.epfl.ch/%7Estamatak/index-Dateien/countManual7.0.4.php + +RAxML step-by-step tutorial + http://wwwkramer.in.tum.de/exelixis/hands-On.html + + -- Andreas Tille <[email protected]> Thu, 28 Apr 2011 14:29:21 +0200 Added: trunk/packages/raxml/trunk/debian/changelog =================================================================== --- trunk/packages/raxml/trunk/debian/changelog (rev 0) +++ trunk/packages/raxml/trunk/debian/changelog 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1,5 @@ +raxml (7.2.6-1) unstable; urgency=low + + * Initial release Closes: #xxxxxx + + -- Andreas Tille <[email protected]> Thu, 28 Apr 2011 14:29:21 +0200 Added: trunk/packages/raxml/trunk/debian/compat =================================================================== --- trunk/packages/raxml/trunk/debian/compat (rev 0) +++ trunk/packages/raxml/trunk/debian/compat 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1 @@ +7 Added: trunk/packages/raxml/trunk/debian/control =================================================================== --- trunk/packages/raxml/trunk/debian/control (rev 0) +++ trunk/packages/raxml/trunk/debian/control 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1,23 @@ +Source: raxml +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 8), help2man +Standards-Version: 3.9.2 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/raxml/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/raxml/trunk/ +Homepage: http://wwwkramer.in.tum.de/exelixis/software.html + +Package: raxml +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Randomized Axelerated Maximum Likelihood + RAxML is a program for sequential and parallel Maximum Likelihood-based + inference of large phylogenetic trees. It has originally been derived + from fastDNAml. + . + There are freely accessible web-servers available for RAxML at + http://phylobench.vital-it.ch/raxml-bb/ and + http://8ball.sdsc.edu:8889/cipres-web/Bootstrap.do . Added: trunk/packages/raxml/trunk/debian/copyright =================================================================== --- trunk/packages/raxml/trunk/debian/copyright (rev 0) +++ trunk/packages/raxml/trunk/debian/copyright 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1,27 @@ +Format: http://dep.debian.net/deps/dep5/ +Name: RAxML +Maintainer: Alexandros Stamatakis <[email protected]> +Source: http://wwwkramer.in.tum.de/exelixis/software.html + +Copyright: © 2000-2011 Alexandros Stamatakis +License: GPL-2+ + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. +X-Comment: On Debian systems, the complete text of the GNU General Public + License version 2 can be found in `/usr/share/common-licenses/GPL-2'. + + +Files: debian/* +Copyright: © 2011 Andreas Tille <[email protected]> +License: Same as RAxML Added: trunk/packages/raxml/trunk/debian/dirs =================================================================== --- trunk/packages/raxml/trunk/debian/dirs (rev 0) +++ trunk/packages/raxml/trunk/debian/dirs 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1,2 @@ +usr/share/man/man1 + Added: trunk/packages/raxml/trunk/debian/install =================================================================== --- trunk/packages/raxml/trunk/debian/install (rev 0) +++ trunk/packages/raxml/trunk/debian/install 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1 @@ +raxmlHPC usr/bin Added: trunk/packages/raxml/trunk/debian/rules =================================================================== --- trunk/packages/raxml/trunk/debian/rules (rev 0) +++ trunk/packages/raxml/trunk/debian/rules 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1,25 @@ +#!/usr/bin/make -f + +# Copyright (C) Andreas Tille <[email protected]> +# License: GPL + +exe=raxmlHPC + +%: + dh $@ + +override_dh_auto_clean: + $(MAKE) -f Makefile.gcc clean + +override_dh_auto_build: + $(MAKE) -f Makefile.gcc + +override_dh_auto_install: + help2man --no-info --help-option="-h" --version-option="-v" \ + --name="Randomized Axelerated Maximum Likelihood" \ + $(CURDIR)/$(exe) > $(CURDIR)/debian/`dh_listpackages`/usr/share/man/man1/$(exe).1 + +get-orig-source: + @echo "The watch file fails in reporting non-Alpha versions." + @echo "Just go to http://wwwkramer.in.tum.de/exelixis/software.html"; + @echo "and download the latest non-Alpha version." Property changes on: trunk/packages/raxml/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/raxml/trunk/debian/source/format =================================================================== --- trunk/packages/raxml/trunk/debian/source/format (rev 0) +++ trunk/packages/raxml/trunk/debian/source/format 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/raxml/trunk/debian/watch =================================================================== --- trunk/packages/raxml/trunk/debian/watch (rev 0) +++ trunk/packages/raxml/trunk/debian/watch 2011-04-28 12:52:03 UTC (rev 6699) @@ -0,0 +1,6 @@ +version=3 +opts="downloadurlmangle=s/count(\d+)Win.php/countSource$1.php/","dversionmangle=s/\.//g" \ + http://wwwkramer.in.tum.de/exelixis/software.html .*countSource(\d+)\.php + +#opts="downloadurlmangle=s/RAxML v *(\d+)\.(\d+)\.(\d+) source code now available for download/countSource$1$2$3.php/" \ +# http://wwwkramer.in.tum.de/exelixis/software.html .*countSource(\d+)\.php _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
