Author: moeller Date: 2011-05-03 10:10:52 +0000 (Tue, 03 May 2011) New Revision: 6753
Removed: trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.doc-base.EX Modified: trunk/packages/ampliconnoise/trunk/debian/ trunk/packages/ampliconnoise/trunk/debian/changelog trunk/packages/ampliconnoise/trunk/debian/control trunk/packages/ampliconnoise/trunk/debian/get-orig-source trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch Log: Uploaded ampliconnoise to Debian server. Property changes on: trunk/packages/ampliconnoise/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Deleted: trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.doc-base.EX =================================================================== --- trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.doc-base.EX 2011-05-03 06:25:44 UTC (rev 6752) +++ trunk/packages/ampliconnoise/trunk/debian/ampliconnoise.doc-base.EX 2011-05-03 10:10:52 UTC (rev 6753) @@ -1,20 +0,0 @@ -Document: ampliconnoise -Title: Debian ampliconnoise Manual -Author: <insert document author here> -Abstract: This manual describes what ampliconnoise is - and how it can be used to - manage online manuals on Debian systems. -Section: unknown - -Format: debiandoc-sgml -Files: /usr/share/doc/ampliconnoise/ampliconnoise.sgml.gz - -Format: postscript -Files: /usr/share/doc/ampliconnoise/ampliconnoise.ps.gz - -Format: text -Files: /usr/share/doc/ampliconnoise/ampliconnoise.text.gz - -Format: HTML -Index: /usr/share/doc/ampliconnoise/html/index.html -Files: /usr/share/doc/ampliconnoise/html/*.html Modified: trunk/packages/ampliconnoise/trunk/debian/changelog =================================================================== --- trunk/packages/ampliconnoise/trunk/debian/changelog 2011-05-03 06:25:44 UTC (rev 6752) +++ trunk/packages/ampliconnoise/trunk/debian/changelog 2011-05-03 10:10:52 UTC (rev 6753) @@ -1,7 +1,14 @@ -ampliconnoise (1.22-1ubuntu4) lucid; urgency=low +ampliconnoise (1.22-2) unstable; urgency=low * Initial upload (Closes: #624362). + * Helped the (still too complicated) update script. + * Added myself to uploaders. + -- Steffen Moeller <[email protected]> Tue, 03 May 2011 10:55:36 +0200 + +ampliconnoise (1.22-1ubuntu4) lucid; urgency=low + + [ Tim Booth ] * Included required data and set paths to find it. * Fixed build dependency on libmpich2-dev Modified: trunk/packages/ampliconnoise/trunk/debian/control =================================================================== --- trunk/packages/ampliconnoise/trunk/debian/control 2011-05-03 06:25:44 UTC (rev 6752) +++ trunk/packages/ampliconnoise/trunk/debian/control 2011-05-03 10:10:52 UTC (rev 6753) @@ -3,7 +3,7 @@ Priority: extra Maintainer: Debian Med Packaging Team <[email protected]> DM-Upload-Allowed: yes -Uploaders: Tim Booth <[email protected]>, Andreas Tille <[email protected]> +Uploaders: Tim Booth <[email protected]>, Andreas Tille <[email protected]>, Steffen Moeller <[email protected]> Build-Depends: quilt (>= 0.46-7~), debhelper (>= 7.1~), libgsl0-dev, libmpich2-dev (>= 1.2) Standards-Version: 3.9.2 Homepage: http://code.google.com/p/ampliconnoise/ Modified: trunk/packages/ampliconnoise/trunk/debian/get-orig-source =================================================================== --- trunk/packages/ampliconnoise/trunk/debian/get-orig-source 2011-05-03 06:25:44 UTC (rev 6752) +++ trunk/packages/ampliconnoise/trunk/debian/get-orig-source 2011-05-03 10:10:52 UTC (rev 6753) @@ -1,21 +1,31 @@ #!/bin/sh # script to download and repack source package becsue of stray file in top level +# bail out upon error +set -e + +# extra verbosity set -x + +origDir=../tarballs +if [ -r .svn/deb-layout ]; then + . .svn/deb-layout +fi + PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'` -VERSION=`uscan --verbose --force-download | \ +VERSION=`uscan --verbose --force-download --destdir "$origDir" --no-symlink | \ grep "Newest version on remote site is .* local version is .*" | \ head -n 1 | \ sed "s/Newest version on remote site is \([-0-9.]\+\),.*/\1/"` UPSTREAMNAME=AmpliconNoise +if [ ! -d "$origDir" ]; then mkdir -p "$origDir" ; fi +cd "$origDir" -mkdir -p ../tarballs -cd ../tarballs -test `ls|wc -l` = 0 || { echo "../tarballs not empty" ; exit 1 ; } +find . -name "${UPSTREAMNAME}V${VERSION}" -type d | xargs -r rm -r +tar -xzf ${UPSTREAMNAME}V${VERSION}.tar.gz +find ${UPSTREAMNAME}V${VERSION} -name .svn -type d | xargs -r rm -rf +find . -name "ampliconnoise_*.orig.tar.gz" -type l | xargs -r rm -tar -xzf ../${UPSTREAMNAME}V${VERSION}.tar.gz -rm -f .* - -GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz * -rm -rf * +GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz ${UPSTREAMNAME}V${VERSION} +find . -name "${UPSTREAMNAME}V${VERSION}" -type d | xargs -r rm -r Modified: trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch =================================================================== --- trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch 2011-05-03 06:25:44 UTC (rev 6752) +++ trunk/packages/ampliconnoise/trunk/debian/patches/fix-path-for-data.patch 2011-05-03 10:10:52 UTC (rev 6753) @@ -9,8 +9,10 @@ A better fix would be to allow setting of the Data directory via an environment variable or a variable passed to MAKE at build time. This could be contributed back to upstream. ---- a/SeqNoise/SeqNoise.h -+++ b/SeqNoise/SeqNoise.h +Index: AmpliconNoiseV1.22/SeqNoise/SeqNoise.h +=================================================================== +--- AmpliconNoiseV1.22.orig/SeqNoise/SeqNoise.h 2011-05-03 11:46:15.574549909 +0200 ++++ AmpliconNoiseV1.22/SeqNoise/SeqNoise.h 2011-05-03 11:46:30.442415391 +0200 @@ -113,7 +113,7 @@ /********DEFAULTS***********/ #define DEF_SIGMA 30.0 @@ -20,8 +22,10 @@ /***************************/ /******Programming Constants************/ ---- a/SeqDistM/SeqDistM.h -+++ b/SeqDistM/SeqDistM.h +Index: AmpliconNoiseV1.22/SeqDistM/SeqDistM.h +=================================================================== +--- AmpliconNoiseV1.22.orig/SeqDistM/SeqDistM.h 2011-05-03 11:46:15.582549837 +0200 ++++ AmpliconNoiseV1.22/SeqDistM/SeqDistM.h 2011-05-03 11:46:30.442415391 +0200 @@ -71,7 +71,7 @@ /* User defined structures */ @@ -31,8 +35,10 @@ typedef struct s_Align ---- a/SeqDist/SeqDist.h -+++ b/SeqDist/SeqDist.h +Index: AmpliconNoiseV1.22/SeqDist/SeqDist.h +=================================================================== +--- AmpliconNoiseV1.22.orig/SeqDist/SeqDist.h 2011-05-03 11:46:15.558550053 +0200 ++++ AmpliconNoiseV1.22/SeqDist/SeqDist.h 2011-05-03 11:46:30.442415391 +0200 @@ -71,7 +71,7 @@ /* User defined structures */ @@ -42,8 +48,10 @@ typedef struct s_Align ---- a/SeqNoiseM/SeqNoiseM.h -+++ b/SeqNoiseM/SeqNoiseM.h +Index: AmpliconNoiseV1.22/SeqNoiseM/SeqNoiseM.h +=================================================================== +--- AmpliconNoiseV1.22.orig/SeqNoiseM/SeqNoiseM.h 2011-05-03 11:46:15.546550163 +0200 ++++ AmpliconNoiseV1.22/SeqNoiseM/SeqNoiseM.h 2011-05-03 11:46:30.442415391 +0200 @@ -113,7 +113,7 @@ /********DEFAULTS***********/ #define DEF_SIGMA 30.0 @@ -53,8 +61,10 @@ /***************************/ /******Programming Constants************/ ---- a/PyroNoiseM/PyroNoiseM.h -+++ b/PyroNoiseM/PyroNoiseM.h +Index: AmpliconNoiseV1.22/PyroNoiseM/PyroNoiseM.h +=================================================================== +--- AmpliconNoiseV1.22.orig/PyroNoiseM/PyroNoiseM.h 2011-05-03 11:46:15.554550089 +0200 ++++ AmpliconNoiseV1.22/PyroNoiseM/PyroNoiseM.h 2011-05-03 11:46:30.442415391 +0200 @@ -36,7 +36,7 @@ #define OVERCALL_THRESH 6.0 /*?*/ @@ -64,8 +74,10 @@ #define OUT_FILE_STUB "-out" #define INIT_FILE "-lin" ---- a/PyroNoise/PyroNoise.h -+++ b/PyroNoise/PyroNoise.h +Index: AmpliconNoiseV1.22/PyroNoise/PyroNoise.h +=================================================================== +--- AmpliconNoiseV1.22.orig/PyroNoise/PyroNoise.h 2011-05-03 11:46:15.538550235 +0200 ++++ AmpliconNoiseV1.22/PyroNoise/PyroNoise.h 2011-05-03 11:46:30.446415355 +0200 @@ -37,7 +37,7 @@ #define OVERCALL_THRESH 6.0 /*?*/ @@ -75,8 +87,10 @@ #define OUT_FILE_STUB "-out" #define INIT_FILE "-lin" ---- a/Perseus/Perseus.h -+++ b/Perseus/Perseus.h +Index: AmpliconNoiseV1.22/Perseus/Perseus.h +=================================================================== +--- AmpliconNoiseV1.22.orig/Perseus/Perseus.h 2011-05-03 11:46:15.566549981 +0200 ++++ AmpliconNoiseV1.22/Perseus/Perseus.h 2011-05-03 11:46:30.446415355 +0200 @@ -86,7 +86,7 @@ #define WEIGHTDELIM '_' @@ -86,8 +100,10 @@ #ifndef min #define min(x, y) ((x) < (y) ? (x) : (y)) ---- a/PyroDist/PyroDist.h -+++ b/PyroDist/PyroDist.h +Index: AmpliconNoiseV1.22/PyroDist/PyroDist.h +=================================================================== +--- AmpliconNoiseV1.22.orig/PyroDist/PyroDist.h 2011-05-03 11:46:15.530550307 +0200 ++++ AmpliconNoiseV1.22/PyroDist/PyroDist.h 2011-05-03 11:46:30.446415355 +0200 @@ -34,7 +34,7 @@ #define LEFT 1 #define UP 2 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
