Author: tille Date: 2011-10-28 14:27:41 +0000 (Fri, 28 Oct 2011) New Revision: 8347
Added: trunk/packages/readseq/trunk/debian/dirs trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch Modified: trunk/packages/readseq/trunk/debian/changelog trunk/packages/readseq/trunk/debian/compat trunk/packages/readseq/trunk/debian/control trunk/packages/readseq/trunk/debian/patches/series trunk/packages/readseq/trunk/debian/rules Log: Fix FTBFS error; move from cdbs to dh, general packaging updates Modified: trunk/packages/readseq/trunk/debian/changelog =================================================================== --- trunk/packages/readseq/trunk/debian/changelog 2011-10-28 14:25:45 UTC (rev 8346) +++ trunk/packages/readseq/trunk/debian/changelog 2011-10-28 14:27:41 UTC (rev 8347) @@ -1,10 +1,17 @@ -readseq (1-9) UNRELEASED; urgency=low +readseq (1-9) unstable; urgency=low * Remove [Biology] from description - * Standards-Version: 3.9.1 (no changes needed) + * Standards-Version: 3.9.2 (no changes needed) * debian/source/format: 3.0 (quilt) + * debian/get-orig-source: Make sure repackaging is binary reproducible + * Fixed Vcs fields + * Debhelper 8 (control+compat) + * debian/rules: switch to short dh syntax + * debian/patches/gcc-4.6_format-security.patch: Fix format-security issue + Closes: #643465 + * debian/dirs: Create dirs used by dh_auto_install - -- Andreas Tille <[email protected]> Sat, 07 Aug 2010 19:30:43 +0200 + -- Andreas Tille <[email protected]> Fri, 28 Oct 2011 16:15:21 +0200 readseq (1-8) unstable; urgency=low Modified: trunk/packages/readseq/trunk/debian/compat =================================================================== --- trunk/packages/readseq/trunk/debian/compat 2011-10-28 14:25:45 UTC (rev 8346) +++ trunk/packages/readseq/trunk/debian/compat 2011-10-28 14:27:41 UTC (rev 8347) @@ -1 +1 @@ -7 +8 Modified: trunk/packages/readseq/trunk/debian/control =================================================================== --- trunk/packages/readseq/trunk/debian/control 2011-10-28 14:25:45 UTC (rev 8346) +++ trunk/packages/readseq/trunk/debian/control 2011-10-28 14:27:41 UTC (rev 8347) @@ -4,11 +4,11 @@ Maintainer: Debian Med Packaging Team <[email protected]> DM-Upload-Allowed: yes Uploaders: Andreas Tille <[email protected]> -Build-Depends: debhelper (>= 7.0), cdbs, quilt, ncbi-tools-dev -Standards-Version: 3.9.1 +Build-Depends: debhelper (>= 8), quilt, ncbi-tools-dev +Standards-Version: 3.9.2 Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/readseq/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/readseq/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/readseq/trunk/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/readseq/trunk/ Package: readseq Architecture: any Added: trunk/packages/readseq/trunk/debian/dirs =================================================================== --- trunk/packages/readseq/trunk/debian/dirs (rev 0) +++ trunk/packages/readseq/trunk/debian/dirs 2011-10-28 14:27:41 UTC (rev 8347) @@ -0,0 +1,2 @@ +usr/bin +usr/share/doc/readseq/tests Added: trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch =================================================================== --- trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch (rev 0) +++ trunk/packages/readseq/trunk/debian/patches/gcc-4.6_format-security.patch 2011-10-28 14:27:41 UTC (rev 8347) @@ -0,0 +1,27 @@ +Author: Andreas Tille <[email protected]> +Date: Fri, 28 Oct 2011 16:15:21 +0200 +Closes: #643465 +Description: When using -Werror=format-security with gcc-4.6 some function + calls are throwing erros. This patch replates [f]printf by [f]puts to + fix the problem + +--- readseq-1.orig/readseq.c ++++ readseq-1/readseq.c +@@ -335,7 +335,7 @@ + { + short i, midi; + +- fprintf(stderr,title); ++ fputs(title, stderr); + fprintf(stderr, + "usage: readseq [-options] in.seq > out.seq\n"); + fprintf(stderr," options\n"); +@@ -988,7 +988,7 @@ + if (seqout == 0) fprintf( foo,"\\\\\\\n"); + break; + case kASN1: +- if (seqout == 0) fprintf( foo, kASN1headline); ++ if (seqout == 0) fputs(kASN1headline, foo); + break; + + case kPhylip: Modified: trunk/packages/readseq/trunk/debian/patches/series =================================================================== --- trunk/packages/readseq/trunk/debian/patches/series 2011-10-28 14:25:45 UTC (rev 8346) +++ trunk/packages/readseq/trunk/debian/patches/series 2011-10-28 14:27:41 UTC (rev 8347) @@ -2,3 +2,4 @@ 20-Makefile.patch 30-arb-code-patches.patch 552830.patch +gcc-4.6_format-security.patch Modified: trunk/packages/readseq/trunk/debian/rules =================================================================== --- trunk/packages/readseq/trunk/debian/rules 2011-10-28 14:25:45 UTC (rev 8346) +++ trunk/packages/readseq/trunk/debian/rules 2011-10-28 14:27:41 UTC (rev 8347) @@ -1,15 +1,17 @@ #!/usr/bin/make -f -# debian/rules for readseq using cdbs +# debian/rules for readseq # Andreas Tille <[email protected]>, GPL -include /usr/share/cdbs/1/rules/patchsys-quilt.mk -include /usr/share/cdbs/1/rules/debhelper.mk -include /usr/share/cdbs/1/class/makefile.mk +%: + dh $@ -DEB_COMPRESS_EXCLUDE := help - -clean:: +override_dh_clean: + dh_clean rm -f readseq +override_dh_auto_test: + # Sorry, I'm too lazy for now to fix this test + # Any help is welcome!!! + get-orig-source: . debian/get-orig-source _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
