Author: tille Date: 2011-11-29 11:04:33 +0000 (Tue, 29 Nov 2011) New Revision: 8702
Added: trunk/packages/python-pynast/trunk/debian/doc-base Modified: trunk/packages/python-pynast/trunk/debian/changelog trunk/packages/python-pynast/trunk/debian/control trunk/packages/python-pynast/trunk/debian/links trunk/packages/python-pynast/trunk/debian/pynast.1 Log: Added doc-base file; finally the rename of the binary package was documented - reverted my change in debian/control Modified: trunk/packages/python-pynast/trunk/debian/changelog =================================================================== --- trunk/packages/python-pynast/trunk/debian/changelog 2011-11-29 11:03:12 UTC (rev 8701) +++ trunk/packages/python-pynast/trunk/debian/changelog 2011-11-29 11:04:33 UTC (rev 8702) @@ -17,6 +17,8 @@ * Dephelper 8 (control+compat) * debian/links: Link packages JavaScript libraries * debian/rules: remove incomplete links to JavaScript libraries + * debian/doc-base: created docbase file + * debian/pynast.1: escape hyphen character -- Andreas Tille <[email protected]> Tue, 29 Nov 2011 11:22:19 +0100 Modified: trunk/packages/python-pynast/trunk/debian/control =================================================================== --- trunk/packages/python-pynast/trunk/debian/control 2011-11-29 11:03:12 UTC (rev 8701) +++ trunk/packages/python-pynast/trunk/debian/control 2011-11-29 11:04:33 UTC (rev 8702) @@ -13,7 +13,7 @@ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-nast/trunk/ X-Python-Version: >= 2.5 -Package: python-pynast +Package: pynast Architecture: all Depends: ${misc:Depends}, ${python:Depends}, libjs-jquery, libjs-underscore Description: alignment of short DNA sequences @@ -39,4 +39,3 @@ alignment. J. Gregory Caporaso, Kyle Bittinger, Frederic D. Bushman, Todd Z. DeSantis, Gary L. Andersen, and Rob Knight. January 15, 2010, DOI 10.1093/bioinformatics/btp636. Bioinformatics 26: 266-267. - Added: trunk/packages/python-pynast/trunk/debian/doc-base =================================================================== --- trunk/packages/python-pynast/trunk/debian/doc-base (rev 0) +++ trunk/packages/python-pynast/trunk/debian/doc-base 2011-11-29 11:04:33 UTC (rev 8702) @@ -0,0 +1,17 @@ +Document: python-pynast +Title: Python Nearest Alignment Space Termination tool +Author: The PyNAST Project +Abstract: alignment of short DNA sequences + Given a set of sequences and a template alignment, PyNAST will align the + input sequences against the template alignment, and return a multiple + sequence alignment which contains the same number of positions (or + columns) as the template alignment. This facilitates the analysis of new + sequences in the context of existing alignments, and additional data + derived from existing alignments such as phylogenetic trees. Because + any protein or nucleic acid sequences and template alignments can be + provided, PyNAST is not limited to the analysis of 16s rDNA sequences. +Section: Science/Biology + +Format: html +Files: /usr/share/doc/pynast/html/* +Index: /usr/share/doc/pynast/html/index.html Modified: trunk/packages/python-pynast/trunk/debian/links =================================================================== --- trunk/packages/python-pynast/trunk/debian/links 2011-11-29 11:03:12 UTC (rev 8701) +++ trunk/packages/python-pynast/trunk/debian/links 2011-11-29 11:04:33 UTC (rev 8702) @@ -1,2 +1,2 @@ -usr/share/javascript/jquery/jquery.js usr/share/doc/python-pynast/html/_static/jquery.js -usr/share/javascript/underscore/underscore.js usr/share/doc/python-pynast/html/_static/underscore.js +usr/share/javascript/jquery/jquery.js usr/share/doc/pynast/html/_static/jquery.js +usr/share/javascript/underscore/underscore.js usr/share/doc/pynast/html/_static/underscore.js Modified: trunk/packages/python-pynast/trunk/debian/pynast.1 =================================================================== --- trunk/packages/python-pynast/trunk/debian/pynast.1 2011-11-29 11:03:12 UTC (rev 8701) +++ trunk/packages/python-pynast/trunk/debian/pynast.1 2011-11-29 11:04:33 UTC (rev 8702) @@ -1,10 +1,9 @@ -.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.40.4. .. and only minimally edited .TH VERSION: "1" "August 2011" "Version: pynast 1.1" "User Commands" .SH NAME PyNAST \- alignment of short DNA sequences .SH SYNOPSIS .B pynast -[\fIoptions\fR] \fI{-i input_fp -t template_fp}\fR +[\fIoptions\fR] \fI{\-i input_fp \-t template_fp}\fR .SH DESCRIPTION [] indicates optional input (order unimportant) {} indicates required input (order unimportant) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
