Author: tille
Date: 2011-12-08 21:42:59 +0000 (Thu, 08 Dec 2011)
New Revision: 8850
Modified:
trunk/packages/ensembl/ensembl/trunk/debian/changelog
trunk/packages/ensembl/ensembl/trunk/debian/rules
Log:
9 lintian warnings about non-executable scripts less
Modified: trunk/packages/ensembl/ensembl/trunk/debian/changelog
===================================================================
--- trunk/packages/ensembl/ensembl/trunk/debian/changelog 2011-12-08
21:38:46 UTC (rev 8849)
+++ trunk/packages/ensembl/ensembl/trunk/debian/changelog 2011-12-08
21:42:59 UTC (rev 8850)
@@ -25,6 +25,7 @@
- fix some permissions
- use Debian packaged JavaScript library tinymce
- do not provide ensembl-variation/scripts/import/run.me
+ - make bash scripts executable
* debian/ensembl.dirs:
- Do not create directories in /var/tmp which are created in postinst
anyway
Modified: trunk/packages/ensembl/ensembl/trunk/debian/rules
===================================================================
--- trunk/packages/ensembl/ensembl/trunk/debian/rules 2011-12-08 21:38:46 UTC
(rev 8849)
+++ trunk/packages/ensembl/ensembl/trunk/debian/rules 2011-12-08 21:42:59 UTC
(rev 8850)
@@ -60,13 +60,16 @@
-name "do_flatfile_dump_registry" -o -name
"parse_snp_to_ensembl_mouse" \
| xargs -r --max-args 1
debian/adjust_shebang_line.sh
- echo "Adjusting path to Perl wherever it may be found" ; \
- egrep -rl "^#!\s*/.*/perl" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!\s*/\(usr\|localsw\)/.*/perl%#!/usr/bin/perl%' ; \
- egrep -rl "^#!\s*/.*/perl" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!\s*/\(usr\|localsw\|software\)/.*/perl%#!/usr/bin/perl%' ; \
- echo "Adjusting path to Bash wherever it may be found" ; \
- egrep -rl "^#!\s*/.*/bash" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!\s*/\(usr\|localsw\)/.*/bash%#!/bin/bash%' ; \
- egrep -rl "^#!.*ENV.*PERL" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!.*%#!/usr/bin/perl%' ; \
+ # echo "Adjusting path to Perl wherever it may be found"
+ egrep -rl "^#!\s*/.*/perl" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!\s*/\(usr\|localsw\)/.*/perl%#!/usr/bin/perl%'
+ egrep -rl "^#!\s*/.*/perl" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!\s*/\(usr\|localsw\|software\)/.*/perl%#!/usr/bin/perl%'
+ # echo "Adjusting path to Bash wherever it may be found"
+ egrep -rl "^#!\s*/.*/bash" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!\s*/\(usr\|localsw\)/.*/bash%#!/bin/bash%'
+ egrep -rl "^#!.*ENV.*PERL" $(TMPINSTDIR) | xargs -r --max-args 1 sed -i
'1s%^#!.*%#!/usr/bin/perl%'
+ # some scripts are not executable
+ egrep -rl "^#\!\s*/.*/bash" $(TMPINSTDIR)/ensembl-functgenomics/scripts
| xargs -r --max-args 1 chmod a+x
+
find $(TMPINSTDIR) -name Makefile.PL -delete
mkdir -p $(CURDIR)/debian/tmp/etc/default/ensembl.d/
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