Author: tille Date: 2011-12-14 09:06:32 +0000 (Wed, 14 Dec 2011) New Revision: 8948
Added: trunk/packages/bioperl/trunk/debian/source/ trunk/packages/bioperl/trunk/debian/source/format Modified: trunk/packages/bioperl/trunk/debian/changelog trunk/packages/bioperl/trunk/debian/control Log: Applied patch by Luca Capello, source format 3.0 (quilt) Modified: trunk/packages/bioperl/trunk/debian/changelog =================================================================== --- trunk/packages/bioperl/trunk/debian/changelog 2011-12-14 07:36:54 UTC (rev 8947) +++ trunk/packages/bioperl/trunk/debian/changelog 2011-12-14 09:06:32 UTC (rev 8948) @@ -1,3 +1,18 @@ +bioperl (1.6.901-2) unstable; urgency=low + + [ Luca Capello ] + * debian/control: + + add Recommends: to some libraries already in libbio-perl-perl's + for binaries showing help output (Closes: #650412). + * debian/README.Debian: + + new file with a more detailed explanation about the above. + + [ Andreas Tille ] + * debian/source/format: 3.0 (quilt) + * Added myself to Uploaders + + -- Andreas Tille <[email protected]> Wed, 14 Dec 2011 09:11:41 +0100 + bioperl (1.6.901-1) unstable; urgency=low * New upstream release. Modified: trunk/packages/bioperl/trunk/debian/control =================================================================== --- trunk/packages/bioperl/trunk/debian/control 2011-12-14 07:36:54 UTC (rev 8947) +++ trunk/packages/bioperl/trunk/debian/control 2011-12-14 09:06:32 UTC (rev 8948) @@ -5,6 +5,7 @@ DM-Upload-Allowed: yes Uploaders: Charles Plessy <[email protected]>, Steffen Moeller <[email protected]>, + Andreas Tille <[email protected]> Build-Depends: debhelper (>= 8) Build-Depends-Indep: perl, perl-modules (>= 5.10.1), libio-string-perl, @@ -54,13 +55,70 @@ Package: bioperl Architecture: all Depends: libbio-perl-perl ( = ${source:Version} ), ${misc:Depends}, ${perl:Depends} -Recommends: bioperl-run ( >= 1.6.0 ) +Recommends: bioperl-run ( >= 1.6.0 ), +# for the following see #650412 +# most of `binary -help` outputs + perl-doc, +# some libraries already in libbio-perl-perl's Recommends: +# bp_biofetch_genbank_proxy + libhttp-message-perl, + libwww-perl, + libcache-cache-perl, +# bp_blast2tree + libbio-perl-run-perl, +# bp_bulk_load_gff + libdbi-perl, +# bp_chaos_plot + libgd-gd2-perl, +# bp_das_server + libapache-dbi-perl, +# bp_download_query_genbank + liburi-perl, +# bp_einfo +# liburi-perl +# libhttp-message-perl + libxml-simple-perl, +# bp_fast_load_gff +# libdbi-perl +# bp_fetch [not for local indexing] +# bp_flanks +# libhttp-message-perl +# bp_genbank2gff +# libhttp-message-perl +# libdbi-perl +# bp_genbank2gff3 + libyaml-perl, +# bp_hivq +# libhttp-message-perl +# libxml-simple-perl +# bp_meta_gff +# libdbi-perl +# bp_netinstall +# bp_pairwise_kaks +# libbio-perl-run-perl +# bp_process_wormbase + libace-perl, +# bp_query_entrez_taxa +# bp_remote_blast +# bp_revtrans-motif + liblist-moreutils-perl, +# bp_taxid4species + libxml-twig-perl, +# bp_taxonomy2tree + libset-scalar-perl +Suggests: groff-base Description: Perl tools for computational molecular biology The Bioperl project is a coordinated effort to collect computational methods routinely used in bioinformatics into a set of standard CPAN-style, well-documented, and freely available Perl modules. It is well-accepted throughout the community and used in many high-profile projects, e.g., Ensembl. + . + The recommended packages are needed to run some of the included + binaries, for a detailed explanation including the specific Perl + modules please see README.Debian. + . + The suggested package enhances the manual pages. Package: libbio-perl-perl Section: perl Added: trunk/packages/bioperl/trunk/debian/source/format =================================================================== --- trunk/packages/bioperl/trunk/debian/source/format (rev 0) +++ trunk/packages/bioperl/trunk/debian/source/format 2011-12-14 09:06:32 UTC (rev 8948) @@ -0,0 +1 @@ +3.0 (quilt) _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
