Author: tille Date: 2012-02-16 07:35:03 +0000 (Thu, 16 Feb 2012) New Revision: 9676
Added: trunk/packages/phyutility/ trunk/packages/phyutility/trunk/ trunk/packages/phyutility/trunk/debian/ trunk/packages/phyutility/trunk/debian/changelog trunk/packages/phyutility/trunk/debian/compat trunk/packages/phyutility/trunk/debian/control trunk/packages/phyutility/trunk/debian/copyright trunk/packages/phyutility/trunk/debian/rules trunk/packages/phyutility/trunk/debian/source/ trunk/packages/phyutility/trunk/debian/source/format trunk/packages/phyutility/trunk/debian/watch Log: Inject some preliminary packaging stuff for phyutility; UNTESTED! will need some time to finish, volunteers welcome Added: trunk/packages/phyutility/trunk/debian/changelog =================================================================== --- trunk/packages/phyutility/trunk/debian/changelog (rev 0) +++ trunk/packages/phyutility/trunk/debian/changelog 2012-02-16 07:35:03 UTC (rev 9676) @@ -0,0 +1,5 @@ +phyutility (2.2.4-1) UNRELEASED; urgency=low + + * Initial release (Closes: #?????) + + -- Andreas Tille <[email protected]> Mon, 21 Feb 2011 08:17:38 +0100 Added: trunk/packages/phyutility/trunk/debian/compat =================================================================== --- trunk/packages/phyutility/trunk/debian/compat (rev 0) +++ trunk/packages/phyutility/trunk/debian/compat 2012-02-16 07:35:03 UTC (rev 9676) @@ -0,0 +1 @@ +8 Added: trunk/packages/phyutility/trunk/debian/control =================================================================== --- trunk/packages/phyutility/trunk/debian/control (rev 0) +++ trunk/packages/phyutility/trunk/debian/control 2012-02-16 07:35:03 UTC (rev 9676) @@ -0,0 +1,37 @@ +Source: phyutility +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 8), javahelper (>=0.25), openjdk-6-jdk, ant, libjebl2-java, +Standards-Version: 3.9.2 +Homepage: http://code.google.com/p/phyutility/ +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/phyutility/trunk +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/phyutility/trunk/ + +Package: phyutility +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends} +Description: simple analyses or modifications on both phylogenetic trees and data matrices + Phyutility (fyoo-til-i-te) is a command line program that performs + simple analyses or modifications on both trees and data matrices. + . + Currently it performs the following functions (to suggest another + feature, submit an Issue and use the label Type-Enhancement) : + . + Trees + * rerooting + * pruning + * type conversion + * consensus + * leaf stability + * lineage movement + * tree support + . + Data Matrices + * concatenate alignments + * genbank parsing + * trimming alignments + * search NCBI + * fetch NCBI Added: trunk/packages/phyutility/trunk/debian/copyright =================================================================== --- trunk/packages/phyutility/trunk/debian/copyright (rev 0) +++ trunk/packages/phyutility/trunk/debian/copyright 2012-02-16 07:35:03 UTC (rev 9676) @@ -0,0 +1,30 @@ +Format: http://dep.debian.net/deps/dep5/ +Upstream-Name: phyutility +Upstream-Contact: Stephen Smith <[email protected]> +Source: http://code.google.com/p/phyutility/downloads + +Files: * +Copyright: © 2007-2012 Stephen Smith <[email protected]> +License: GPL-3.0+ + +Files: debian/* +Copyright: 2012 Andreas Tille <[email protected]> +License: GPL-3.0+ + +License: GPL-3.0+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in + "/usr/share/common-licenses/GPL-3". Added: trunk/packages/phyutility/trunk/debian/rules =================================================================== --- trunk/packages/phyutility/trunk/debian/rules (rev 0) +++ trunk/packages/phyutility/trunk/debian/rules 2012-02-16 07:35:03 UTC (rev 9676) @@ -0,0 +1,9 @@ +#!/usr/bin/make -f + +JAVA_HOME=/usr/lib/jvm/default-java + +%: + dh $@ --with javahelper + +get-orig-source: + uscan --verbose --force-download Property changes on: trunk/packages/phyutility/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/phyutility/trunk/debian/source/format =================================================================== --- trunk/packages/phyutility/trunk/debian/source/format (rev 0) +++ trunk/packages/phyutility/trunk/debian/source/format 2012-02-16 07:35:03 UTC (rev 9676) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/phyutility/trunk/debian/watch =================================================================== --- trunk/packages/phyutility/trunk/debian/watch (rev 0) +++ trunk/packages/phyutility/trunk/debian/watch 2012-02-16 07:35:03 UTC (rev 9676) @@ -0,0 +1,3 @@ +version=3 +opts="dversionmangle=s/\./_/g" \ + http://googlecode.debian.net/p/phyutility/phyutility_(.+)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
