Nilesh Patra pushed to branch master at Debian Med / mcaller
Commits:
3cd274e9 by Nilesh Patra at 2021-06-21T19:04:36+05:30
Also run build time tests
- - - - -
1 changed file:
- debian/rules
Changes:
=====================================
debian/rules
=====================================
@@ -9,6 +9,16 @@ include /usr/share/dpkg/default.mk
%:
dh $@ --with python3
+override_dh_auto_test:
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+ cp -a testdata testdata_save
+ ./mCaller.py -p testdata/test_positions_A.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
+ ./mCaller.py -p testdata/test_positions_m6A.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
+ ./mCaller.py -p testdata/test_positions.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-t 4 --train -f testdata/masonread1.fastq
+ rm -rf testdata
+ mv testdata_save testdata
+endif
+
override_dh_auto_clean:
dh_auto_clean
#rm -f model_NN_6_m6A.pkl testdata/masonread1.eventalign.diffs.6
testdata/masonread1.eventalign.diffs.6.train
View it on GitLab:
https://salsa.debian.org/med-team/mcaller/-/commit/3cd274e938111353c5239b82afc464e01b7cf864
--
View it on GitLab:
https://salsa.debian.org/med-team/mcaller/-/commit/3cd274e938111353c5239b82afc464e01b7cf864
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