Nilesh Patra pushed to branch master at Debian Med / mcaller
Commits:
e32f3b56 by Nilesh Patra at 2021-06-21T13:58:42+00:00
Minor change in run-unit-test
- - - - -
1 changed file:
- debian/tests/run-unit-test
Changes:
=====================================
debian/tests/run-unit-test
=====================================
@@ -15,11 +15,11 @@ cp -a ${CUR_DIR}/testdata "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
mkdir -p model_data
-cp -a ${CUR_DIR}/*pkl model_data
+cp -a ${CUR_DIR}/*.pkl .
-mCaller -p testdata/test_positions_A.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-d model_data/r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
-mCaller -p testdata/test_positions_m6A.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-d model_data/r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
-mCaller -p testdata/test_positions.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-t 4 --train -f testdata/masonread1.fastq
+mCaller -p testdata/test_positions_A.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
+mCaller -p testdata/test_positions_m6A.txt -r
testdata/pb_ecoli_polished_assembly.fasta -e testdata/masonread1.eventalign.tsv
-d r95_twobase_model_NN_6_m6A.pkl -f testdata/masonread1.fastq
+mCaller -p testdata/test_positions.txt -r
testdata/pb_ecoli_polished_assembly.fasta -d r95_twobase_model_NN_6_m6A.pkl -e
testdata/masonread1.eventalign.tsv -t 4 --train -f testdata/masonread1.fastq
rm -rf model_data
rm -rf testdata
View it on GitLab:
https://salsa.debian.org/med-team/mcaller/-/commit/e32f3b56f4ce99e472ef52028ec434f9a5110056
--
View it on GitLab:
https://salsa.debian.org/med-team/mcaller/-/commit/e32f3b56f4ce99e472ef52028ec434f9a5110056
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