Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
25a0b7de by Andreas Tille at 2021-06-26T13:42:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,25 +1,25 @@
-Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
+Last-Update: Sat, 26 Jun 2021 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging}
|
+ dcmtk | 177 | {covid-19,imaging}
|
orthanc | 89 | {imaging,covid-19,practice}
|
- orthanc-wsi | 46 |
{oncology,laboratory,imaging,covid-19,his,practice} |
- gdcm | 40 | {imaging-dev}
|
- htsjdk | 28 | {bio-dev}
|
- amide | 25 | {imaging}
|
- openslide | 23 | {imaging}
|
+ orthanc-wsi | 45 |
{oncology,laboratory,imaging,covid-19,his,practice} |
+ gdcm | 39 | {imaging-dev}
|
+ htsjdk | 27 | {bio-dev}
|
+ amide | 24 | {imaging}
|
+ openslide | 22 | {imaging}
|
dicom3tools | 20 | {imaging}
|
dicomscope | 19 | {imaging}
|
dcm2niix | 17 | {imaging}
|
- ngs-sdk | 15 | {bio-dev}
|
orthanc-webviewer | 15 | {imaging}
|
- adun.app | 14 | {bio}
|
+ ngs-sdk | 14 | {bio-dev}
|
odin | 14 | {imaging,imaging-dev}
|
+ adun.app | 13 | {bio}
|
gnumed-server | 13 | {practice,covid-19}
|
+ gdcm | 12 | {covid-19,imaging}
|
insighttoolkit4 | 12 | {imaging-dev}
|
invesalius | 12 | {imaging}
|
- gdcm | 11 | {covid-19,imaging}
|
gdcm | 9 | {imaging-dev}
|
minc-tools | 9 | {imaging}
|
dicomnifti | 8 | {imaging}
|
@@ -36,31 +36,32 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
salmid | 6 | {bio}
|
biojava-live | 5 | {bio-dev}
|
bio-tradis | 5 | {bio,bio-dev}
|
+ dicompyler | 5 | {oncology}
|
librg-utils-perl | 5 | {bio}
|
- ngs-sdk | 5 | {bio-dev}
|
nifti2dicom | 5 | {imaging}
|
nifticlib | 5 | {imaging-dev}
|
openslide | 5 | {imaging-dev}
|
phast | 5 | {bio}
|
runcircos-gui | 5 | {bio}
|
- staden | 5 | {bio}
|
treeview | 5 | {bio,bio-phylogeny}
|
beast-mcmc | 4 | {bio-phylogeny,bio}
|
bitseq | 4 | {bio}
|
blasr | 4 | {bio,bio-ngs}
|
- dicompyler | 4 | {oncology}
|
embassy-domainatrix | 4 | {cloud,bio}
|
embassy-domalign | 4 | {cloud,bio}
|
emboss-explorer | 4 | {bio}
|
getdata | 4 | {bio}
|
king | 4 | {typesetting,imaging}
|
- lagan | 4 | {bio}
|
libdivsufsort | 4 | {bio-dev}
|
mia | 4 | {imaging}
|
+ ngs-sdk | 4 | {bio-dev}
|
obitools | 4 | {bio}
|
+ orthanc-mysql | 4 | {imaging}
|
orthanc-postgresql | 4 | {imaging}
|
+ oscar | 4 | {tools,data,practice}
|
plastimatch | 4 | {imaging}
|
saint | 4 | {bio}
|
+ sight | 4 | {imaging}
|
spread-phy | 4 | {bio,bio-phylogeny}
|
anfo | 3 | {bio,cloud}
|
arden | 3 | {bio,cloud}
|
@@ -75,13 +76,13 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
fsm-lite | 3 | {bio}
|
gatb-core | 3 | {bio}
|
jellyfish1 | 3 | {bio}
|
+ lagan | 3 | {bio}
|
lamarc | 3 | {bio}
|
libncl | 3 | {bio}
|
librdp-taxonomy-tree-java | 3 | {bio-dev}
|
libsbml | 3 | {bio-dev}
|
mhap | 3 | {bio,bio-ngs}
|
- orthanc-mysql | 3 | {imaging}
|
- oscar | 3 | {tools,data,practice}
|
+ nipype | 3 | {imaging-dev,imaging}
|
phyutility | 3 | {cloud,bio}
|
piler | 3 | {bio}
|
prime-phylo | 3 | {cloud,bio}
|
@@ -90,9 +91,9 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
rdp-alignment | 3 | {bio}
|
rdp-classifier | 3 | {bio}
|
sibsim4 | 3 | {bio,cloud}
|
- sight | 3 | {imaging}
|
spaced | 3 | {bio}
|
stacks | 3 | {bio}
|
+ staden | 3 | {bio}
|
tracetuner | 3 | {bio}
|
yaha | 3 | {bio}
|
zalign | 3 | {cloud,bio}
|
@@ -108,7 +109,6 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
libpal-java | 2 | {bio-dev}
|
mauve-aligner | 2 | {bio}
|
microbegps | 2 | {bio}
|
- nipype | 2 | {imaging-dev,imaging}
|
orthanc-gdcm | 2 | {imaging}
|
paraclu | 2 | {bio,cloud}
|
pbdagcon | 2 | {bio}
|
@@ -132,7 +132,6 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
cat-bat | 1 | {bio,covid-19}
|
delly | 1 | {bio,covid-19}
|
hinge | 1 | {bio}
|
- htscodecs | 1 | {covid-19,bio-dev}
|
intake | 1 | {bio,bio-dev}
|
kmerresistance | 1 | {bio}
|
libbio-mage-utils-perl | 1 | {bio-dev}
|
@@ -148,12 +147,10 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
papyrus | 1 | {imaging-dev}
|
parallel-fastq-dump | 1 | {covid-19}
|
plasmidseeker | 1 | {bio}
|
- python-wdlparse | 1 | {bio-dev}
|
samblaster | 1 | {bio,covid-19}
|
samtools-legacy | 1 | {bio-dev}
|
segemehl | 1 | {bio}
|
simpleitk | 1 | {imaging-dev}
|
- simrisc | 1 | {oncology}
|
skesa | 1 | {bio}
|
spaln | 1 | {bio,covid-19}
|
srf | 1 | {bio-dev}
|
@@ -174,6 +171,7 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
fis-gtm | 0 | {his}
|
gatb-core | 0 | {bio-dev}
|
gifticlib | 0 | {imaging-dev}
|
+ htscodecs | 0 | {covid-19,bio-dev}
|
libbigwig | 0 | {bio-dev}
|
libbiod | 0 | {bio-dev}
|
libbioparser-dev | 0 | {bio-dev}
|
@@ -218,12 +216,14 @@ Last-Update: Sat, 26 Jun 2021 01:42:04 +0000
python-bcbio-gff | 0 | {bio-dev}
|
python-epimodels | 0 | {epi}
|
python-seqcluster | 0 | {bio-dev,covid-19}
|
+ python-wdlparse | 0 | {bio-dev}
|
q2-sample-classifier | 0 | {bio-dev,bio}
|
resfinder-db | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
seq-gen | 0 | {bio}
|
shovill | 0 | {covid-19,bio}
|
simpleitk | 0 | {imaging-dev}
|
+ simrisc | 0 | {oncology}
|
skewer | 0 | {bio}
|
smrtanalysis | 0 | {covid-19,bio}
|
svim | 0 | {bio}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/25a0b7de4bc24694c008f3b0ee05bbc9710f97d7
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/25a0b7de4bc24694c008f3b0ee05bbc9710f97d7
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