Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
08a7b301 by Andreas Tille at 2021-06-29T13:42:20+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,55 +1,58 @@
-Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
+Last-Update: Tue, 29 Jun 2021 13:42:03 +0000
Source | Vote | Tasks
| Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 168 | {covid-19,imaging}
|
- orthanc | 86 | {imaging,covid-19,practice}
|
- orthanc-wsi | 44 |
{oncology,laboratory,imaging,covid-19,his,practice} |
- gdcm | 39 | {imaging-dev}
|
- htsjdk | 26 | {bio-dev}
|
- amide | 25 | {imaging}
|
- openslide | 22 | {imaging}
|
- dicom3tools | 20 | {imaging}
|
- dicomscope | 19 | {imaging}
|
- dcm2niix | 17 | {imaging}
|
- odin | 15 | {imaging,imaging-dev}
|
- ngs-sdk | 14 | {bio-dev}
|
- orthanc-webviewer | 14 | {imaging}
|
- gdcm | 13 | {covid-19,imaging}
|
+ dcmtk | 173 | {covid-19,imaging}
|
+ orthanc | 91 | {imaging,covid-19,practice}
|
+ orthanc-wsi | 49 |
{oncology,laboratory,imaging,covid-19,his,practice} |
+ gdcm | 36 | {imaging-dev}
|
+ htsjdk | 28 | {bio-dev}
|
+ amide | 26 | {imaging}
|
+ openslide | 23 | {imaging}
|
+ dicom3tools | 22 | {imaging}
|
+ dicomscope | 20 | {imaging}
|
+ dcm2niix | 19 | {imaging}
|
+ odin | 17 | {imaging,imaging-dev}
|
+ gdcm | 15 | {covid-19,imaging}
|
+ ngs-sdk | 15 | {bio-dev}
|
+ orthanc-webviewer | 15 | {imaging}
|
insighttoolkit4 | 13 | {imaging-dev}
|
- adun.app | 12 | {bio}
|
+ invesalius | 13 | {imaging}
|
gnumed-server | 12 | {practice,covid-19}
|
- invesalius | 12 | {imaging}
|
- dicomnifti | 9 | {imaging}
|
- minc-tools | 9 | {imaging}
|
- nifticlib | 9 | {imaging}
|
+ adun.app | 11 | {bio}
|
+ minc-tools | 11 | {imaging}
|
+ dicomnifti | 10 | {imaging}
|
+ nifticlib | 10 | {imaging}
|
+ pixelmed | 10 | {imaging}
|
gdcm | 8 | {imaging-dev}
|
- pixelmed | 8 | {imaging}
|
ngs-sdk | 7 | {bio-dev}
|
- openslide | 7 | {imaging-dev}
|
busco | 6 | {bio,covid-19}
|
libminc | 6 | {imaging-dev}
|
nifti2dicom | 6 | {imaging}
|
+ openslide | 6 | {imaging-dev}
|
orthanc-dicomweb | 6 | {covid-19,imaging}
|
salmid | 6 | {bio}
|
- biojava-live | 5 | {bio-dev}
|
ea-utils | 5 | {bio}
|
jebl2 | 5 | {bio-dev}
|
librg-utils-perl | 5 | {bio}
|
+ mia | 5 | {imaging}
|
+ ngs-sdk | 5 | {bio-dev}
|
nifti2dicom | 5 | {imaging}
|
nifticlib | 5 | {imaging-dev}
|
+ plastimatch | 5 | {imaging}
|
salmon | 5 | {covid-19,bio}
|
+ sight | 5 | {imaging}
|
+ biojava-live | 4 | {bio-dev}
|
dicompyler | 4 | {oncology}
|
+ king | 4 | {typesetting,imaging}
|
+ libdivsufsort | 4 | {bio-dev}
|
melting | 4 | {cloud,bio}
|
- mia | 4 | {imaging}
|
- ngs-sdk | 4 | {bio-dev}
|
+ nipype | 4 | {imaging-dev,imaging}
|
orthanc-mysql | 4 | {imaging}
|
orthanc-postgresql | 4 | {imaging}
|
oscar | 4 | {tools,data,practice}
|
phast | 4 | {bio}
|
- plastimatch | 4 | {imaging}
|
runcircos-gui | 4 | {bio}
|
- sight | 4 | {imaging}
|
treeview | 4 | {bio,bio-phylogeny}
|
bart-view | 3 | {imaging}
|
beast-mcmc | 3 | {bio-phylogeny,bio}
|
@@ -61,11 +64,8 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
embassy-domalign | 3 | {cloud,bio}
|
emboss-explorer | 3 | {bio}
|
getdata | 3 | {bio}
|
- king | 3 | {typesetting,imaging}
|
lagan | 3 | {bio}
|
- libdivsufsort | 3 | {bio-dev}
|
libsbml | 3 | {bio-dev}
|
- nipype | 3 | {imaging-dev,imaging}
|
obitools | 3 | {bio}
|
saint | 3 | {bio}
|
spread-phy | 3 | {bio,bio-phylogeny}
|
@@ -88,7 +88,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
lamarc | 2 | {bio}
|
libncl | 2 | {bio}
|
librdp-taxonomy-tree-java | 2 | {bio-dev}
|
- logol | 2 | {bio}
|
mhap | 2 | {bio,bio-ngs}
|
orthanc-gdcm | 2 | {imaging}
|
pbdagcon | 2 | {bio}
|
@@ -118,6 +117,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
libmuscle | 1 | {bio-dev}
|
libpal-java | 1 | {bio-dev}
|
libvistaio | 1 | {imaging-dev}
|
+ logol | 1 | {bio}
|
mauve-aligner | 1 | {bio}
|
metaphlan2 | 1 | {bio}
|
microbegps | 1 | {bio}
|
@@ -129,6 +129,7 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
plasmidseeker | 1 | {bio}
|
proalign | 1 | {bio,bio-phylogeny}
|
pscan-chip | 1 | {bio}
|
+ python-wdlparse | 1 | {bio-dev}
|
qcumber | 1 | {bio}
|
rambo-k | 1 | {bio}
|
rdp-alignment | 1 | {bio}
|
@@ -213,7 +214,6 @@ Last-Update: Tue, 29 Jun 2021 01:42:03 +0000
python-bcbio-gff | 0 | {bio-dev}
|
python-epimodels | 0 | {epi}
|
python-seqcluster | 0 | {bio-dev,covid-19}
|
- python-wdlparse | 0 | {bio-dev}
|
q2-sample-classifier | 0 | {bio-dev,bio}
|
resfinder-db | 0 | {bio}
|
sbmltoolbox | 0 | {bio-dev}
|
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356
--
View it on GitLab:
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/08a7b3016f032590941d84b08567bcf015490356
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