Pierre Gruet pushed to branch master at Debian Med / picard-tools
Commits: eb31452f by Pierre Gruet at 2021-11-17T21:39:31+01:00 Information in d/README.source is outdated - - - - - 02c98cce by Pierre Gruet at 2021-11-17T21:47:04+01:00 New upstream version 2.26.5+dfsg - - - - - afcf32d0 by Pierre Gruet at 2021-11-17T21:48:03+01:00 Update upstream source from tag 'upstream/2.26.5+dfsg' Update to upstream version '2.26.5+dfsg' with Debian dir c0fa7746651ca432d796ca12ed769a0c80b814da - - - - - 6380e91c by Pierre Gruet at 2021-11-17T21:58:43+01:00 Refreshing d/copyright - - - - - 07614d9e by Pierre Gruet at 2021-11-17T22:21:18+01:00 Refreshing patches - - - - - 7eb3d8e3 by Pierre Gruet at 2021-11-23T22:12:33+01:00 Using my debian.org email address - - - - - 4d1423c5 by Pierre Gruet at 2021-11-27T20:49:43+01:00 Setting properly the classpath in the .manifest file, no jar list in PicardCommandLine - - - - - 604a2394 by Pierre Gruet at 2021-11-27T20:49:56+01:00 Updating the list of dependencies - - - - - 8ccc72ec by Pierre Gruet at 2021-11-27T20:50:33+01:00 Correcting a type error in a test concerning Illumina data provider - - - - - f53741c0 by Pierre Gruet at 2021-11-27T20:50:54+01:00 Adding a Lintian override for the embedded javascript - - - - - 358bbd06 by Pierre Gruet at 2021-11-27T20:51:34+01:00 Adding a dependency of the doc package in libjs-jquery - - - - - 5d7526bd by Pierre Gruet at 2021-11-27T20:52:19+01:00 Adding myself as uploader - - - - - 749155db by Pierre Gruet at 2021-11-27T20:53:44+01:00 Updating changelog - - - - - ad572e7e by Pierre Gruet at 2021-11-27T20:55:34+01:00 Merge branch 'master' of salsa.debian.org:med-team/picard-tools - - - - - 35fe7b68 by Pierre Gruet at 2021-11-27T20:58:10+01:00 New upstream version 2.26.6+dfsg - - - - - 40348821 by Pierre Gruet at 2021-11-27T20:59:20+01:00 Update upstream source from tag 'upstream/2.26.6+dfsg' Update to upstream version '2.26.6+dfsg' with Debian dir 2731bb2876fde27953f739d99c3e7a75252f5ae9 - - - - - cd4efd32 by Pierre Gruet at 2021-11-27T21:02:50+01:00 Refreshing patches - - - - - bd539825 by Pierre Gruet at 2021-11-27T21:44:34+01:00 Raising Standards version to 4.6.0 (no change) - - - - - d2aeb3b5 by Pierre Gruet at 2021-11-27T21:47:16+01:00 Updating changelog - - - - - cce55ffb by Pierre Gruet at 2021-12-02T22:35:46+01:00 Upload to unstable - - - - - 30 changed files: - + .github/workflows/trivy.yml - .travis.yml - Dockerfile - LICENSE.txt - README.md - build.gradle - build_push_docker.sh - − debian/README.source - debian/bin/PicardCommandLine - debian/changelog - debian/control - debian/copyright - + debian/libpicard-java-doc.lintian-overrides - − debian/libpicard-java.classpath - debian/libpicard-java.manifest - debian/patches/10-build.xml.patch - debian/patches/20-shadowjar.patch - debian/patches/30-tests-fix-dataprovider.patch - debian/patches/40-tests-fix-testng.patch - debian/patches/correct_dataprovider_TestDontMergeAbuttingData.patch - debian/patches/fix_unreadabletests.patch - + scripts/travis/check_for_pull_request - src/main/java/picard/analysis/AlignmentSummaryMetrics.java - src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java - src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java - src/main/java/picard/analysis/CollectBaseDistributionByCycle.java - src/main/java/picard/analysis/CollectGcBiasMetrics.java - src/main/java/picard/analysis/CollectInsertSizeMetrics.java - src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java - src/main/java/picard/analysis/CollectOxoGMetrics.java The diff was not included because it is too large. View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/8fb8b99e49367ddae0505ff7287806f8ab92a4e9...cce55ffb44014102a84715981b8bd715d55cd4a6 -- View it on GitLab: https://salsa.debian.org/med-team/picard-tools/-/compare/8fb8b99e49367ddae0505ff7287806f8ab92a4e9...cce55ffb44014102a84715981b8bd715d55cd4a6 You're receiving this email because of your account on salsa.debian.org.
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